Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03638 ATGGCTCCTAAGATGAACAACTCCACGACGAGTTCACGGTTAGTGACAGAGATGGTGAAGGGTTCACATGAGTTCAAGATAAAGGGATATTCTTTGGTGAAGGGAATTGGAGTAGGAAAATTCATTGAAAGTGAAACGTTCAATGTCGGAGGATATGGGTGGGCTATACACTTCTACCCCGACGGCAAGGAGCCCCAAGTCAATGCTGTTTACATCTCCGTTTTCGTTGCACTTGTTTCCAATGATAAAGATGTCCCCGCGAAGTTCGAAATCGCCATGCATGACCAAAGAGGGATAGCGAAGGACTTTGTCCTTGGTCACTTTGATGGCTCCCTTATGAAAACCCTTCACACTATATCAGTGGGCGAACTGTGGGGCTTTACGCGTTTTTACAAACGCTTTCATCTTGAACACTCGATGTACCTCAACGATGACTGCCTACAATTAAATTGCACTGTTGGGGTTTTCCCGACGACCATAGATCGTTCCATGGCAATACAGGTTCCTGAGTCTACCATTGGGGCACATTTCGGGATGCTGTTTGAAGATGACGAATCATCTGATGTTACTTTCTGCGTTGAAGGAGACAAGTTTCGTGCACATAAGATTGTGCTGGCGGCTCGATCAACTGTGTTTAAAACTCAGTTTTTCAGTGGAATGGACAAGTTTGATGGAGAGATACTTGTTACTGACATGAAGCCTAAGGTTTTCAAGGCTTTGCTTCACTTTATTTATAACGACACTCTTGAACAAGCTGAAGAGTTCTATTTGTCACAGTCATCATTCATGTCTTCTTTATCAGAATTGTTTATAGTGAAGTTGCTAGCTGCTGCACACCAGTATGATTTGCCAAGGCTAAAGCTGATTTGCGAATCTGTACTTTGCAAGCACATATCTATAGATTCTGTGGCTCACATTATGGCTCTTTCCGAACGATATGTTGCTTCCGAATTGAAGTCCATTTGTCTGCAATTTGCTACAGAAAACCTTGATGCTGTGATGAAATCTGATGGTTTCAAGCACCTTAAGGAAACGTGTCCAGTTCTTCAATTTGAACTGCTAAAGAGTGTAGCAGCAATAGTTGAGCGTGCCAAACCTTCTGGTAGTGTTGACACTGATGAAACACCTATGCCAAATGAAATAGATGCTGAAACCTCAAGTTATAATCCGTCCAGTGACGAGGAAGACGATATCCCAGATTAG 1203 0.4289 MAPKMNNSTTSSRLVTEMVKGSHEFKIKGYSLVKGIGVGKFIESETFNVGGYGWAIHFYPDGKEPQVNAVYISVFVALVSNDKDVPAKFEIAMHDQRGIAKDFVLGHFDGSLMKTLHTISVGELWGFTRFYKRFHLEHSMYLNDDCLQLNCTVGVFPTTIDRSMAIQVPESTIGAHFGMLFEDDESSDVTFCVEGDKFRAHKIVLAARSTVFKTQFFSGMDKFDGEILVTDMKPKVFKALLHFIYNDTLEQAEEFYLSQSSFMSSLSELFIVKLLAAAHQYDLPRLKLICESVLCKHISIDSVAHIMALSERYVASELKSICLQFATENLDAVMKSDGFKHLKETCPVLQFELLKSVAAIVERAKPSGSVDTDETPMPNEIDAETSSYNPSSDEEDDIPD 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03638 400 MobiDBLite consensus disorder prediction 365 400 - -
Spst1g03638 400 SMART BTB_4 187 298 IPR000210 GO:0005515
Spst1g03638 400 SUPERFAMILY POZ domain 164 298 IPR011333 -
Spst1g03638 400 SUPERFAMILY TRAF domain-like 18 159 - -
Spst1g03638 400 Gene3D Potassium Channel Kv1.1; Chain A 163 292 IPR011333 -
Spst1g03638 400 CDD MATH 21 153 IPR002083 GO:0005515
Spst1g03638 400 Gene3D - 297 367 - -
Spst1g03638 400 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 8 352 IPR045005 GO:0016567
Spst1g03638 400 Pfam BTB/POZ domain 179 297 IPR000210 GO:0005515
Spst1g03638 400 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 18 156 IPR008974 GO:0005515
Spst1g03638 400 CDD BTB_POZ_BPM_plant 173 295 - -
Spst1g03638 400 ProSiteProfiles BTB domain profile. 187 253 IPR000210 GO:0005515
Spst1g03638 400 ProSiteProfiles MATH/TRAF domain profile. 20 153 IPR002083 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03638 Spst-Chr1 45956522 45958037 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Spst1g03638 BTB 1.9e-24 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03638 K10523 - gmx:100809683 444.891