Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03636 ATGTACAACCCTGCGGCGGCGAGTAGGAGCGTCCTGGCGTCGCGGACGAGTTCGCGGTCGGTGACGGAGACGGTGAACGGTTCGCACAAGTTCGTGATCAAGGGTTACTCTCTTGCCAAGGGAATCGGCGTCGGAAAACACATCGCGAGCGAGACTTTCACCGTCGGAGGGTACCAGTGGGCGATTTACTTCTATCCTGACGGCAAGAATCCGGAAGATAACTCCGCCTATGTCTCCGTCTTCATCGCGCTCGCTTCGGAAGGCACCGACGTTCGCGCGCTCTTCGAACTCACCTTGCTCGACCAGAGCGGCAACGGCAAGCACAAGGTGCACAGCCACTTCGATCGGTCGCTCGAGAGTGGGCCCTACACTCTCAAATATCGAGGCAGCATGTGGGGTTATAAGAGATTTTTTAAACGGGCTCAACTCGAAGCATCAAGTTTCCTGAAAGAAGACTGCTTGAAGATAAACTGCACTGTTGGTGTTGTGGTTTCATCCATTGATTGTTCTAAATTAAACACAATACAGGTTCCTGAGTCTGATATTGGGTCACATTTTGGAATGCTGTTAGAGAATGAGGAGGGATCCGATGTTACTTTCTCTGTCAGTGGAGAAAGGTTTCATGCTCATAAACTTGTTTTGGCTGCTAGATCAACTGCATTTGAAACTGAGTTTTTCAATGGGATGGAGGAGGATGAACGGGATATAGTTGTTACTGACATGGAACCTAAGGTTTTCAAGGCTTTACTTCATTTTATTTATCGAGACACTCTTATAGATGATGAAGAACTTTTTGTGTCACGTTCATCGTTCTTGCCTTCAGTATCTGAATCATTTGCAGCAAAGTTGTTAGCTGCTGCGGAAAAGTATGGTTTGCCTAGACTTAAGCTGATGTGTGAATCGGTACTTTGTAAAGACATTTCTATAGATTCTGTAGCCTATATTCTGGCTCTTGCCGATCGCCATCGTGCTACAGAATTGAAGTCTGTCTGTCTACAATTTTCTGCTGAAAACCTTGTTGCCGTGATGCAATCTGATGGTTTTGAGTATCTTAAGGAAAATTGTCCATTGCTGCAATCGGAATTGCTAAAGACTGTGGCAGGATGTGAGGAGGAATTTAGTGGAGAAGGAAAATGTCGGAGTGTCTGGGCCCAATTTTCTGATGGTGGCGATACCAATGATAGGAGTGTAAGACAACAAACCTGGGAAAATGGAGTTGACAGAAGTCAAAGCTTATGGGTTCACCTTTCTGATGGTGTTAACAACAATGACAGGAGTCCAGGACAAGAACCTTGA 1296 0.4614 MYNPAAASRSVLASRTSSRSVTETVNGSHKFVIKGYSLAKGIGVGKHIASETFTVGGYQWAIYFYPDGKNPEDNSAYVSVFIALASEGTDVRALFELTLLDQSGNGKHKVHSHFDRSLESGPYTLKYRGSMWGYKRFFKRAQLEASSFLKEDCLKINCTVGVVVSSIDCSKLNTIQVPESDIGSHFGMLLENEEGSDVTFSVSGERFHAHKLVLAARSTAFETEFFNGMEEDERDIVVTDMEPKVFKALLHFIYRDTLIDDEELFVSRSSFLPSVSESFAAKLLAAAEKYGLPRLKLMCESVLCKDISIDSVAYILALADRHRATELKSVCLQFSAENLVAVMQSDGFEYLKENCPLLQSELLKTVAGCEEEFSGEGKCRSVWAQFSDGGDTNDRSVRQQTWENGVDRSQSLWVHLSDGVNNNDRSPGQEP 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03636 431 SMART math_3 31 143 IPR002083 GO:0005515
Spst1g03636 431 CDD BTB_POZ_BPM_plant 182 304 - -
Spst1g03636 431 ProSiteProfiles BTB domain profile. 196 262 IPR000210 GO:0005515
Spst1g03636 431 FunFam BTB/POZ and MATH domain-containing protein 4 25 164 - -
Spst1g03636 431 CDD BACK_AtBPM-like 304 365 IPR034090 -
Spst1g03636 431 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 16 363 IPR045005 GO:0016567
Spst1g03636 431 Gene3D - 306 380 - -
Spst1g03636 431 CDD MATH 27 160 IPR002083 GO:0005515
Spst1g03636 431 SUPERFAMILY POZ domain 174 307 IPR011333 -
Spst1g03636 431 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 25 164 IPR008974 GO:0005515
Spst1g03636 431 FunFam BTB-POZ and math domain 1 172 301 - -
Spst1g03636 431 SUPERFAMILY TRAF domain-like 23 162 - -
Spst1g03636 431 SMART BTB_4 196 307 IPR000210 GO:0005515
Spst1g03636 431 Gene3D Potassium Channel Kv1.1; Chain A 172 301 IPR011333 -
Spst1g03636 431 ProSiteProfiles MATH/TRAF domain profile. 26 160 IPR002083 GO:0005515
Spst1g03636 431 Pfam BTB/POZ domain 188 305 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03636 Spst-Chr1 45926462 45930304 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Spst1g03636 BTB 6.5e-26 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03636 K10523 - gmx:100809683 823.157