Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03632 ATGAGAAGGCTTGATGATATACAACCCCACAATCTTCAGCATAAAAGGCGAAGAGACTTAAGGCATGTGCCATGGGAGGTTAAGGGTTTTAAGTTCGTGATTTCTTGCCGCCGTTCTCCGCCGTCAGAAGCCACCGTCTCACCGTCAGTGATGGCAGAAGAGGTTCCGAAACCTCTGAACTACATCCCCGAGGTTATACTCAAGAAGCGCAAAAGCAGTGAAGCATGGGCATTGAGAAAGAAAGAACAATTCCAGCACAAGAATTTCCAATCCATCAAGAAGCCCGAGGATTTCATCCACGAGTATCGCAACAAGGAAGTGGACCTTATTAGATTGAAGCGGAGGGTGAAGAGGAAAGTTCCTCAAGCTAAATCCAACTTATTGATAATCATTCGGATACAGGGGAAAAAGGACATGCATCCGAAGACAAGGAAGGTGTTGTATAGCTTGGGTTTGAGGAGTATTTTCAGTGCGGTTTTTGTGAAGTCAAGTGAAGGAATAATGGCCAAGCTGCAGAGGGTGGAACCATATGTGACCTATGGATACCCAAACCTTAAAAGCATAAAGGAACTAATTTACAAGAAAGGACATGCAAGGATGGATGGGCGGAAAGTTCCCTTGACAGATAATAACATTATTGAGCAGGAATTAGGAAAGTTTGGTATTGTATGCATAGAGGACATGGTGCATCAGATTTATAATGTTGGACCCCACTTTCAGGAAGTTGTCAGATTTATGTGGCCCTTTGCGCTCAACAAGCCAGCTGAAGGATTGAAAGGATCAAAAACCCTATATAAGGAGGGTGGAGACACAGGGAACCGTGAGGATCTCATCAACGAACTAATGGATAAAATGAATTAG 861 0.4379 MRRLDDIQPHNLQHKRRRDLRHVPWEVKGFKFVISCRRSPPSEATVSPSVMAEEVPKPLNYIPEVILKKRKSSEAWALRKKEQFQHKNFQSIKKPEDFIHEYRNKEVDLIRLKRRVKRKVPQAKSNLLIIIRIQGKKDMHPKTRKVLYSLGLRSIFSAVFVKSSEGIMAKLQRVEPYVTYGYPNLKSIKELIYKKGHARMDGRKVPLTDNNIIEQELGKFGIVCIEDMVHQIYNVGPHFQEVVRFMWPFALNKPAEGLKGSKTLYKEGGDTGNREDLINELMDKMN 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03632 286 PANTHER 60S RIBOSOMAL PROTEIN L7 59 286 IPR039699 -
Spst1g03632 286 Pfam Ribosomal protein L30p/L7e 128 178 IPR016082 -
Spst1g03632 286 CDD Ribosomal_L7_archeal_euk 127 286 IPR035808 -
Spst1g03632 286 NCBIfam 60S ribosomal protein uL30 67 286 IPR005998 GO:0000463|GO:0003735|GO:0022625
Spst1g03632 286 SUPERFAMILY Ribosomal protein L30p/L7e 127 286 IPR036919 -
Spst1g03632 286 Gene3D - 127 286 IPR036919 -
Spst1g03632 286 FunFam 60S ribosomal protein L7 127 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03632 Spst-Chr1 45877893 45883838 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03632 51 286 Cytoplasmic Ribosomal Protein Gene Family AT1G80750 55.466 2.09e-91 269
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03632 K02937 - gmx:100500005 416.772