Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03617 ATGTCTCAGACAGAGAAGGATCCGGGTATCAGGTTATTTGGCAGGAAGATTCCGCTGCCGGAATGTCAGATTCCGGCCAACTCAGGACCCATGGATGCTTGCAGCAACATAAAAAAGGCAGAACTGGAAATACCCAGTGAGTGTGGAGAAAACTCTGAGAAACAAGAAAATACGTCTGATTCAAGGGATTGTAAACAAGAGTCCCAACATAAAGTGAAGGAAAATGAACCAACAGTAAATCCCAAACCAGTGGAAGATAATACGGAGAATGGTGGCTCAGATCAAGATAAAGTCTTAAAGAAACCCGACAAGATTCTTCAGTGTCCACGATGCAACAGTTTGGACACCAAGTTTTGTTACTTTAACAACTACAACGTTAACCAACCTCGGCATTTCTGCAAGAATTGTCAAAGGTATTGGACTGCTGGTGGAACAATGAGAAATGTTCCCATAGGTGCTGGGAGAAGGAAGAATAAACACCTAGCATCTCAATACCGACATATTATAGTAACCTCTAATGGAATTCCTACTTCCAGATTAGAAACTGAAGACACATCTGGTTTCCAACATGTCACAAGTCTTGAATCCTCAGTTCCTTTCAGGTCTTCAACAGATAACAGCACTGTTTTGAAATTTGGTCCAGATATCCCTCTCTGCGAATCTATGGATTCAATGCTTAATCTTAGAGACCAGAGAAGATGTGTTGATGCAAGTTCTGTAAACTGTGTTGAGTATGGAGGGGAACCATCGATATGTGGATCATCTGTGACGAATAACGGTACTCAAGGAAATGAATTATCAGAGCAAAAGACATCAAATTGGTTACAATGTTACCCTGTTCCTCCATGGGTATTACCTTATCCAGGTTGGAATAATGTGAGTTCCATGGAAGCAGTTCATCAGTCTTCAGCACCAATGTGTAGTCCACCATACAACACTGGTCCTGCAGCAATGCAATGGTGTCCAGCGCCAGTGGTGGGAATTCCTGGTATGTGCCCACCAAGCATTCCTTTGCAACTTGTACCACCATCATACTGGAGTGGAAAACCACTTTGGAATGCTGGAACTGGGGCAGTGTCTATAGGATCCAATGCTTGCCTTTCGCCATCTTCCTCCACTAGTAACAGTTGCTGCTCAGGCAATGGCTCCCCAACCCTTGGCAAACACGCAAGAGATACGATTTTTGCTGATGAAGAGAAATCAGAGAAGTGTGTTCTGGTTCCAAAGACCATTAGAATTGATGCCCCAAATGAGGCCTCAGAAAGTCCTCTAAGGGCTTCTTTAACTATCAAGCCTGATCAACAGCAATCTGTATTAGATAGTGGTATTTTGAAGAAAGTTGAACCAAAAGAAGGCAAAGATCGTATATTGGGCGCCTCTCAAATCTTGGAAGCCAATCCAGCAGCTATTTCTTGTGCTCATACATTTCAGGAGAGCACATAG 1443 0.431 MSQTEKDPGIRLFGRKIPLPECQIPANSGPMDACSNIKKAELEIPSECGENSEKQENTSDSRDCKQESQHKVKENEPTVNPKPVEDNTENGGSDQDKVLKKPDKILQCPRCNSLDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPIGAGRRKNKHLASQYRHIIVTSNGIPTSRLETEDTSGFQHVTSLESSVPFRSSTDNSTVLKFGPDIPLCESMDSMLNLRDQRRCVDASSVNCVEYGGEPSICGSSVTNNGTQGNELSEQKTSNWLQCYPVPPWVLPYPGWNNVSSMEAVHQSSAPMCSPPYNTGPAAMQWCPAPVVGIPGMCPPSIPLQLVPPSYWSGKPLWNAGTGAVSIGSNACLSPSSSTSNSCCSGNGSPTLGKHARDTIFADEEKSEKCVLVPKTIRIDAPNEASESPLRASLTIKPDQQQSVLDSGILKKVEPKEGKDRILGASQILEANPAAISCAHTFQEST 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03617 480 ProSitePatterns Zinc finger Dof-type signature. 108 144 IPR003851 GO:0003677|GO:0006355
Spst1g03617 480 MobiDBLite consensus disorder prediction 45 98 - -
Spst1g03617 480 MobiDBLite consensus disorder prediction 45 80 - -
Spst1g03617 480 Pfam Dof domain, zinc finger 103 160 IPR003851 GO:0003677|GO:0006355
Spst1g03617 480 ProSiteProfiles Zinc finger Dof-type profile. 106 160 IPR003851 GO:0003677|GO:0006355
Spst1g03617 480 PANTHER CYCLIC DOF FACTOR 2 1 480 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03617 Spst-Chr1 45643695 45646000 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03617 7 480 C2C2-Dof Transcription Factor Family AT5G39660 35.940 4.27e-68 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Spst1g03617 zf-Dof 2.9e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03617 - - gmx:100813787 828.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03617 1 45643695 45646000 Spst1g03617 1 45643695 45646000 ECH
Spst1g03617 1 45643695 45646000 Spst4g00544 4 9337856 9342568 PCT