Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03612 ATGAGTTCCATCCCTTCTTCTTTTCATGTGGGTTCCCAAGCTCCGCCCTTAGGTCATGCTAAGGGGGTTTTGGGTCCAAACCTTGAGATGACGTTGGGCCCTTCAATGGTTCAGCCCCAGGAGTGTAAGGGGACAAAGAGAACCAATGATGAAAGGGTCGAAAACAGGAACTTGTGTTTGAAACGTGGGGAAGAAGGAGAAGCTAAGGGCTCTGCTTCAGGGAAAGATAGGTTCACCAAGCTTTGTGCTAGAGGTCACTGGAGGCCAGCTGAAGATGACAAACTTAAGGAGCTTGTGAGCCAATACGGTCCACAAAATTGGAACTTGATTGCTGAACATTTAGAAGGAAGATCAGATCCTAAGATCAACAGAAGGTCTTTTTCTGAGGAGGAAGAGGAAAAACTTTTGACTGCCCACAAAATGTGTGGTAGCAAATGGGCCATGATTGCTAGACTCTTTCCTGGAAGAACAGATAATGCAGTGAAGAACCATTGGCATGTGATGATGTCTAGGAAGCAGAGGGAGCAGTCTAATAGTGCGTATCGAAGGAGAAAACCAATTATTGATGAACCTGTTCCGAAGGGTTTGAATCTGACATTGTCTAACAACGCAACTAGTGAGTCAACAATCTCAAGCACCATTGATGAGTCTGCTTCAACTTGCACCAACTTCTCCCTTACTCCCTCTTCAGCCAGGTTGACTCCTTCTTTTGAACTCTTAGACCAACCAGGTCCTTCTCAAATTCATCAAGCCTTTCCATCAAAAATGGGACAATCTAGAGCGGATTTGAAGTTGAACAAATATTTTTGTGGTTGGAACGGGTCACATACTGTTGAATACGAGGGACAAATGCTAATGGGAGTGGACCAGTCTAGTTTTTCTGATGCAAACTCAGAAGTATCAGTATCTGAGTCAGTTGCCACCAATAGGTCTAATCTCTCAATTTCTGCAGAGAAAGAGAGTGAAACTATGGGTGATTTCGGGGAGAAGTAA 993 0.4431 MSSIPSSFHVGSQAPPLGHAKGVLGPNLEMTLGPSMVQPQECKGTKRTNDERVENRNLCLKRGEEGEAKGSASGKDRFTKLCARGHWRPAEDDKLKELVSQYGPQNWNLIAEHLEGRSDPKINRRSFSEEEEEKLLTAHKMCGSKWAMIARLFPGRTDNAVKNHWHVMMSRKQREQSNSAYRRRKPIIDEPVPKGLNLTLSNNATSESTISSTIDESASTCTNFSLTPSSARLTPSFELLDQPGPSQIHQAFPSKMGQSRADLKLNKYFCGWNGSHTVEYEGQMLMGVDQSSFSDANSEVSVSESVATNRSNLSISAEKESETMGDFGEK 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03612 330 MobiDBLite consensus disorder prediction 294 330 - -
Spst1g03612 330 MobiDBLite consensus disorder prediction 1 29 - -
Spst1g03612 330 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 84 118 IPR017930 -
Spst1g03612 330 SMART sant 83 122 IPR001005 -
Spst1g03612 330 SMART sant 123 171 IPR001005 -
Spst1g03612 330 Gene3D - 126 187 - -
Spst1g03612 330 MobiDBLite consensus disorder prediction 294 319 - -
Spst1g03612 330 PANTHER MYB PROTEIN-RELATED 84 211 - -
Spst1g03612 330 ProSiteProfiles Myb-like domain profile. 119 169 IPR001005 -
Spst1g03612 330 SUPERFAMILY Homeodomain-like 84 165 IPR009057 -
Spst1g03612 330 Gene3D - 84 125 - -
Spst1g03612 330 CDD SANT 87 119 IPR001005 -
Spst1g03612 330 ProSiteProfiles Myb-like domain profile. 84 118 IPR001005 -
Spst1g03612 330 Pfam Myb-like DNA-binding domain 124 167 IPR001005 -
Spst1g03612 330 Pfam Myb-like DNA-binding domain 84 119 IPR001005 -
Spst1g03612 330 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 119 173 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03612 Spst-Chr1 45570175 45574533 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03612 83 188 MYB Transcription Factor Family AT1G69560 68.644 2.13e-52 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst1g03612 Myb_DNA-binding 7.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03612 K09422 - gmx:100791795 397.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03612 1 45570175 45574533 Spst1g03612 1 45570175 45574533 ECH
Spst1g03612 1 45570175 45574533 Spst4g00547 4 9676244 9677658 PCT