Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03603 ATGGGGAGGCCTCCTTGTTGTGACAAAGTTGGCATCAAGAAAGGTCCATGGACACCTGAGGAGGATATCATCCTTGTCTCATACATCCAAGAACATGGTCCAGGAAATTGGAGATCAGTTCCTACTAATACAGGGTTGTCAAGGTGCAGCAAAAGTTGCAGGCTTAGATGGACAAATTACCTCAGGCCAGGAATCAAGAGAGGAAACTTCACTCCCCATGAGGAAGGAATGATAATTCATCTGCAAGCTCTACTGGGTAACAAATGGGCAGCCATAGCTTCGTATCTTCCACAAAGAACAGATAATGATATCAAGAATTATTGGAACACCCATCTAAAGAAGAAGCTGAAGAAATTTCAAGCTGCCTTAGATCCCCACTCGGCATCAGACTCAACAACCAGTGGTCAGTATCTACCAAAGAGCTTTAATGACAGAAGAAGTTTAGACATCAGCAGCAACAATGACCATGCCTCGTCCATTAGGCTTAGTCAGTCTCAATCCTCCACATATGCCTCAAGCACTGAGAACATCTCAAGGCTCTTGGAAGGTTGGATGAGATCTTCCCCAAAGCCACTCAAGAGATCCCAAGATGAAGAGCTCCAAAGCATTGATGATGATAATAACAACAACAACTTTGAAAGCACTAATAAGCTAGTGAAGTGTGCATCACTGCCTGCTTTGAACATTCATCATCACCACAAAAGAAACAAAGATGATCAAGAGGGTGGTGTAGACATAGTTTCTCATGAAGAGTTTGATTCTATTTTGTCCTTTGAGAACCTAAACAATGCTGCTTGGGACAGGTCCACATGTGATTCCGTGCCTGAGAAGAGTTTTGAAGCTGCTGCCGAATCTTCCCATGAAGAGCGGATTAGGCAAAAATCTGAGAACAACAGTGCTCCTCCATTGTCATTTCTTGAGAAGTGGCTCTTGGATGAAAGCGTTGGTCAAGTGGAGGAGATGATGGAATTATCTCCAATGTTCTGA 987 0.4347 MGRPPCCDKVGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLSRCSKSCRLRWTNYLRPGIKRGNFTPHEEGMIIHLQALLGNKWAAIASYLPQRTDNDIKNYWNTHLKKKLKKFQAALDPHSASDSTTSGQYLPKSFNDRRSLDISSNNDHASSIRLSQSQSSTYASSTENISRLLEGWMRSSPKPLKRSQDEELQSIDDDNNNNNFESTNKLVKCASLPALNIHHHHKRNKDDQEGGVDIVSHEEFDSILSFENLNNAAWDRSTCDSVPEKSFEAAAESSHEERIRQKSENNSAPPLSFLEKWLLDESVGQVEEMMELSPMF 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03603 328 MobiDBLite consensus disorder prediction 125 168 - -
Spst1g03603 328 FunFam MYB-related transcription factor 13 66 - -
Spst1g03603 328 CDD SANT 69 112 IPR001005 -
Spst1g03603 328 Gene3D - 68 136 - -
Spst1g03603 328 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Spst1g03603 328 MobiDBLite consensus disorder prediction 277 300 - -
Spst1g03603 328 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 213 - -
Spst1g03603 328 MobiDBLite consensus disorder prediction 187 211 - -
Spst1g03603 328 CDD SANT 16 61 IPR001005 -
Spst1g03603 328 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Spst1g03603 328 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Spst1g03603 328 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Spst1g03603 328 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Spst1g03603 328 MobiDBLite consensus disorder prediction 281 295 - -
Spst1g03603 328 SMART sant 66 114 IPR001005 -
Spst1g03603 328 SMART sant 13 63 IPR001005 -
Spst1g03603 328 FunFam Transcription factor MYB60 68 136 - -
Spst1g03603 328 Gene3D - 13 66 - -
Spst1g03603 328 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Spst1g03603 328 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03603 Spst-Chr1 45434174 45435565 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03603 1 136 MYB Transcription Factor Family AT5G62470 81.884 3.21e-81 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst1g03603 Myb_DNA-binding 1.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03603 K09422 - gmx:100817854 505.368