Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03573 ATGTATCACGCAAAGAAGTTTTCGCCGGCTAGCATGGTGCCGTATAAATCTCAAGGTGGTGCTGAACAACTTGCAAATGTTGAGGCTTTGGGTGGATCTGCTGCCAAAAATGGCACACCTGCTGGAGGAAGTGGGAAGCAGCGTTTAAGGTGGACATCTGACCTTCATGACCGTTTTGTGGATGCCATTTCACAACTTGGTGGACCAGATAGAGCAACACCAAAAGGTGTCCTTAGAGTGATGGGTGTTCCTGGACTGACCATTTATCATGTTAAAAGCCATTTACAGAAATATCGCCTTGCAAAGTACTTACCTGAATCACCAGCTGATGGTAAAGACTCTAAAGATGAGAAGAGGAATTCTGGAGACAGCTTTTCTGGCGCCGATTCTTCCCCGGGAATGCCAATCAGTGATGCCTTAAGAATGCAGATGGAGGTTCAGAAACGTCTGCATGAGCAGCTTGAGGTTCAAAAGCAATTACAAATGAGAATTGAAGCACAGGGTAAATACTTACAAAAGATCATAGAGGAACAGCAGAAATTAGGTAATACTTTAACAACCTCTGAAACACTTCCTTTATCGCATGATAAACAAACTCATCCCTACTCGGAGGCTTCTGGATCTAGTGATGCCCTTCCAAGCACACTGTCTCCACATAAAAAACAGAGAATTGATGATGGTTCCAAGGATGGCTTCACTGCTTCCCATGTAAGAAAGACTGGACAAAAGAATGACTGCAATGTTGGTCAGTTGGATCCAAACTTGTATGATGATACTGGGTTTGGATTTGATTTGGAGACAAAGAAGGATGAAGATAAGGGGAGTGGACAGTAA 834 0.4353 MYHAKKFSPASMVPYKSQGGAEQLANVEALGGSAAKNGTPAGGSGKQRLRWTSDLHDRFVDAISQLGGPDRATPKGVLRVMGVPGLTIYHVKSHLQKYRLAKYLPESPADGKDSKDEKRNSGDSFSGADSSPGMPISDALRMQMEVQKRLHEQLEVQKQLQMRIEAQGKYLQKIIEEQQKLGNTLTTSETLPLSHDKQTHPYSEASGSSDALPSTLSPHKKQRIDDGSKDGFTASHVRKTGQKNDCNVGQLDPNLYDDTGFGFDLETKKDEDKGSGQ 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03573 277 SUPERFAMILY Homeodomain-like 45 100 IPR009057 -
Spst1g03573 277 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 43 103 IPR017930 -
Spst1g03573 277 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 37 221 IPR044848 GO:0003700
Spst1g03573 277 MobiDBLite consensus disorder prediction 106 123 - -
Spst1g03573 277 MobiDBLite consensus disorder prediction 258 277 - -
Spst1g03573 277 FunFam Myb family transcription factor 45 103 - -
Spst1g03573 277 MobiDBLite consensus disorder prediction 188 216 - -
Spst1g03573 277 MobiDBLite consensus disorder prediction 188 253 - -
Spst1g03573 277 Pfam MYB-CC type transfactor, LHEQLE motif 134 180 IPR025756 -
Spst1g03573 277 MobiDBLite consensus disorder prediction 262 277 - -
Spst1g03573 277 Pfam Myb-like DNA-binding domain 49 99 IPR001005 -
Spst1g03573 277 Gene3D - 45 104 - -
Spst1g03573 277 NCBIfam myb-like DNA-binding domain, SHAQKYF class 46 101 IPR006447 GO:0003677
Spst1g03573 277 MobiDBLite consensus disorder prediction 235 249 - -
Spst1g03573 277 MobiDBLite consensus disorder prediction 219 233 - -
Spst1g03573 277 MobiDBLite consensus disorder prediction 106 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03573 Spst-Chr1 44997751 45000567 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03573 40 226 G2-like Transcription Factor Family AT3G13040 44.976 3.07e-50 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Spst1g03573 Myb_DNA-binding 1.2e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03573 - - gmx:100783132 480.715