LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst1g03571	ATGGGGAAGAAGCGAAAGGTAGCACCCAAATCTTCTCTATCAGCAGAACCTCCACTCAAGCACCACCAACCCGAACCTCAAATTGCGCCTCCCGAGTACGAGGAAGTCGAAGTGGAAGAAGAGGAGGAAGAGGAAGTAGAAGAAGTAGAAGAGGAGGAAGAGGAGGAGGAGGAGGAAGAAGAACAAGACGACGAAGAAGAGCATGAACAGCAACAAGACGAGGACGACGACCCCATCCAGAAGCTTCTGGAACCTTTAAGCAAGGACCAGATCTTGAACCTCTTGTGCGAGGCGGCGGCGAAGCACCGTGACGTGGCGGACCGGATACGCAAGGCGGCGAATGAGGATCCCGTACACCGGAAGATCTTTGTACACGGGCTAGGCTGGGACACCACCGCCGGAACCCTAATCAGCGCGTTCCGGCAGTACGGTGAGATCGAGGACTGCAAGGCCGTCACTGATAAGGTTTCCGGCAAGTCTAAGGGCTACGGGTTCATCCTCTTCAAGACTCGCCGCGGCTCGCGAAACGCACTTAAGCAGCCGCAGAAGAAGATCGGCAACCGCATGACGGCGTGCCAGCTGGCCTCCATCGGCCCCGTCAGTAGCAGTCAGAGCCAGCCACAGGCACTGCCTTCCTCGGCGCCGGTTCTGTCTTCGTCGGGTTCGGAGTACACGCAGAGGAAGATTTACGTGAGCAACGTCGGTGCGGAACTCGATCCGCAGAAGCTTCTGGCGTTTTTCTCGCGGTTCGGGGAAATTGAGGAGGGGCCTCTGGGGCTGGATAAGTTGACGGGAAAACCGAAAGGGTTTTGTTTGTTTGTTTATAGGAGTGCGGAGAGTGCGAAGAGAGCCTTGGAGGAGCCTCATAAGGACTTTGAAGGGCATATTTTGCATTGCCAGAAGGCGATTGATGGGCCCAAGCCCGGGAAGTTGCAGCAGCAGCAGCAGCAGCAGCAACACGGGAACGTGAATACTCAGGCCCGGACCCAGTTTCAGAGGAACGATACTGCAAATGCAGGTGGTGCGTATGTTGGTGCTGCTGCGGCAGCGCAGCCGGGGCACTTGATGGCTCCGGCTGGGCCGGGGATTGGGTTTAACCAGGCGGCGTTGAATCCGGCGCTGGGGCAGGCGTTGACGGCCCTCCTGGCATCGCAGGGGACATTGGGACTGACGAATTTATTGGGTAGTATTGGGACGAGTGCTGCAGTGAACCCTGGTGTGCCTGCTGCGGGGGCTGGAGTGCAGAGTGGTTACAGTGCTCAGTCGAATATTAGTCCTGGTGTTATTGGAGGATATGGGACTCAGGTGGGGTTGCAGGCTACATATCCGAATCCGAATCAGCAGTTAGGGCAGGGTGGTTCTGGAAGAGGGCAATATGGTAGTGGTGGTGCGCCTTACATGGGGCATTAG	1410	0.5688	MGKKRKVAPKSSLSAEPPLKHHQPEPQIAPPEYEEVEVEEEEEEEVEEVEEEEEEEEEEEEQDDEEEHEQQQDEDDDPIQKLLEPLSKDQILNLLCEAAAKHRDVADRIRKAANEDPVHRKIFVHGLGWDTTAGTLISAFRQYGEIEDCKAVTDKVSGKSKGYGFILFKTRRGSRNALKQPQKKIGNRMTACQLASIGPVSSSQSQPQALPSSAPVLSSSGSEYTQRKIYVSNVGAELDPQKLLAFFSRFGEIEEGPLGLDKLTGKPKGFCLFVYRSAESAKRALEEPHKDFEGHILHCQKAIDGPKPGKLQQQQQQQQHGNVNTQARTQFQRNDTANAGGAYVGAAAAAQPGHLMAPAGPGIGFNQAALNPALGQALTALLASQGTLGLTNLLGSIGTSAAVNPGVPAAGAGVQSGYSAQSNISPGVIGGYGTQVGLQATYPNPNQQLGQGGSGRGQYGSGGAPYMGH	469

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst1g03571	469	MobiDBLite	consensus disorder prediction	303	322	-	-
	Spst1g03571	469	MobiDBLite	consensus disorder prediction	443	469	-	-
	Spst1g03571	469	FunFam	UBP1-associated protein 2A	113	197	-	-
	Spst1g03571	469	SUPERFAMILY	RNA-binding domain, RBD	119	200	IPR035979	GO:0003676
	Spst1g03571	469	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	227	316	IPR000504	GO:0003723
	Spst1g03571	469	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	229	296	IPR000504	GO:0003723
	Spst1g03571	469	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	122	188	IPR000504	GO:0003723
	Spst1g03571	469	Gene3D	-	204	343	IPR012677	-
	Spst1g03571	469	Coils	Coil	33	74	-	-
	Spst1g03571	469	MobiDBLite	consensus disorder prediction	197	219	-	-
	Spst1g03571	469	FunFam	UBP1-associated protein 2A	212	347	-	-
	Spst1g03571	469	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	120	197	IPR000504	GO:0003723
	Spst1g03571	469	SMART	rrm1_1	121	193	IPR000504	GO:0003723
	Spst1g03571	469	SMART	rrm1_1	228	300	IPR000504	GO:0003723
	Spst1g03571	469	MobiDBLite	consensus disorder prediction	1	77	-	-
	Spst1g03571	469	SUPERFAMILY	RNA-binding domain, RBD	210	324	IPR035979	GO:0003676
	Spst1g03571	469	PANTHER	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G	32	315	-	-
	Spst1g03571	469	MobiDBLite	consensus disorder prediction	32	73	-	-
	Spst1g03571	469	Gene3D	-	31	203	IPR012677	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst1g03571	Spst-Chr1	44956930	44958339	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Spst1g03571	214	406	C2H2 Transcription Factor Family	AT2G19380	26.108	7.03e-11	62.4

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst1g03571	K12741		-	gmx:100784200	641.343