Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03562 ATGGACCAACAGCACCGCCACGTTGGCACCACCAGCGCATCTAACACTCCCGTGCTCCGCTGTCCAACCGTGCGCACCCTCCCCTTCGCTCGTCTGGTCGCTGCCTCCCGCCGTCGCCTCTTTCTCTCCGACTGCGCTGACCGTCAATCCGACGACGACGCTGAGTGCGGGTACTCCCGCGCTGTGCTGGTCCTCGACATGGTTTGGAACCTCGCCTTCGTAGTCGTGGCCGCCAGTGTCCTCCTCTCCACTCTCCGGGAGCGGCCGTCCACGCCGCTCAGACTCTGGCTCTGCGGCTACGCTTTCGAGTGCGTTCTCCATATGGCTTTCGTCTTCCTCGAGTTCCAAACCGGAGTTCACGGTTCCTTCTCGCACACTACCTATAGCTTTGTGAAGAAGCTAGAGCCTATGAACACTGTGGCATCTTCTATTTGGTGGGTGATTGGATTTTACTGGATTGTTGTGGGTGGCCAAGCACTTTTGGAAGATTCTCCGCGGCTCTACTGGTTAACTGTGGTCTTCCTGGCCTTTGACATATTTTTTATCATCTTTTGCATTGGGATGGCCTGTATAGTTTTCTTTGCTCTCTTCTGCATCATCCCAATAATAGCACTAGCTTATGCTATGAGAATCAGAGAAGGCGCATCCGAAGAAGATATCAGGTCACTTCCTATGTATAGGTTTAGTAAGTCAAATTCATTGGTGATGGTCGATGAGAACAAGAAGCTACTTGTTAATGCAAGAGTAGATTCATGCAGTGGAAGCCATATGAGTGAAGTTTCTCTCAATCCAGATGATTCTGAATGCTGTATCTGCCTATGCCCATATGCTGATGGATCAGAAGTGTATCGGCTTCCGTGTACCCACCATTTTCACTGTGAATGCGTAGGCCGTTGGCTTCGAACAAAAGCAACCTGCCCGCTCTGCAAATTTAATATCCTTAGAGGTGATACATTGGTTTGA 963 0.5078 MDQQHRHVGTTSASNTPVLRCPTVRTLPFARLVAASRRRLFLSDCADRQSDDDAECGYSRAVLVLDMVWNLAFVVVAASVLLSTLRERPSTPLRLWLCGYAFECVLHMAFVFLEFQTGVHGSFSHTTYSFVKKLEPMNTVASSIWWVIGFYWIVVGGQALLEDSPRLYWLTVVFLAFDIFFIIFCIGMACIVFFALFCIIPIIALAYAMRIREGASEEDIRSLPMYRFSKSNSLVMVDENKKLLVNARVDSCSGSHMSEVSLNPDDSECCICLCPYADGSEVYRLPCTHHFHCECVGRWLRTKATCPLCKFNILRGDTLV 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03562 320 ProSiteProfiles Zinc finger RING-type profile. 269 310 IPR001841 -
Spst1g03562 320 SMART ring_2 269 309 IPR001841 -
Spst1g03562 320 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 245 316 IPR013083 -
Spst1g03562 320 PANTHER TARGET OF ERK KINASE MPK-1 41 314 - -
Spst1g03562 320 SUPERFAMILY RING/U-box 263 314 - -
Spst1g03562 320 Pfam Ring finger domain 268 310 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03562 Spst-Chr1 44885298 44888646 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03562 10 317 C3H Transcription Factor Family AT1G68070 42.857 2.32e-88 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03562 - - gmx:100806994 572.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03562 1 44885298 44888646 Spst1g03562 1 44885298 44888646 ECH