Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03559 ATGGAACACCATTTTGGTCAAGACACTGCACATGCATCTGGGTCCTTTGATAAGACTAGGGTTTTGAATGTGAAGCCATTAAGAACTCTTGTTCCTGTGTTCCCTTCACCATCTAATCCTGCTTCATCTTCAAGTCCACAAGGTGGTGCCCCATTTGTTTGTGTTTCTCCTTCTGGTCCTTTCCCTTCTGGGGTTGCACCCTTCTATCCATTCTTTATTTCTCCAGAATCCCAGAGGCTCTCTGAACAGAATGCACCAACCTCCACTGGTCAACGTGTGCCTGCTACTCCGATATCTACTGCAGTTCCAATTAATTCATTTAAGACACCAGCTGGAGCTGCAAATGGTAATGTGGGCTCATCGCGAAAGACTACCCGAAGTCGTGGACAGGTCACAGTCACAGAGGAAGATGGCTACAATAATGTTGAGATAGTTGAAGTTGATGGAGATGAAGAAACTGGGACTGGGAGGTCAAAGCGCAAGTTGCAGAAGAAGATGAAGGGACAGCAGAGTGGCGGTCCTGGTGATATTGATCCAGATGCAGTGGCTGCTGATATTCTCAAGTCACTTAACCCAATGGTTTTTGAGGTACTAAATCAACCAGATGGTAGCAGGGACTCGGTTGCATATACACTCATGATATATGAAGTAATGCGAAGGAAGCTTGGACAAATTGAAGATTCAAATAGGGCAGCTAACTCTGGTGCAAAACGACCTGATTTGAAGGCAGGTGCAATTATGATGAATAAAGGCATTCGAACCAACAGCAAGAAACATATTGGACCTGTGTCTGGTGTTGAGATTGGGGATATTTTCTTTTTCAGATTTGAATTGTGCCTAGTGGGTTTACATGCACCATCTATGGCTGGAATTGATTACATCGGTACCAAAACCAGTCAAGAGGAAGAGCCCTTAGCTGTGAGTATTGTCTCATCTGGAGGGTATGAGGATGATGTGGAGGATGGGGATGTGCTGGTTTACAGTGGCCAAGGTGGGGTTAACCGTGACAAGGGAGCAAGTGATCAGAAGCTTGAAAGGGGTAATCTTGCTTTGGAGAACAGTTACAAAAGAGGTAACGAAGTGAGGGTAATTAGGGGTTTGAAGGATTTGCAACATCCAACTGGGAAGGTATATGTCTATGATGGCCTTTACAAGATTCAAGATTCCTGGGTGGACAGAAAAACTGGCTTCAACGTATTCAAGTATAAATTATTCAGGCTGCCTGGACAGCCTCAAGCATATATGATTTGGAAATCCATTCAACAATGGACGGATAGATCTGCTTCAAGAGCTGGGGTTATATTGCCGGATCTTACTTCCGGGGCTGAAAAAGTACCTGTTTGTCTTGTGAATGATGTTGATACTGAGAAGGGCCCTGCATATTTCACTTACCTCCCAAATCTTAAGAATTTGAGGCCAACTGCTCCTGTGGAATCTTCTATTGGATGTTCTTGTGTTGGTGGATGTCAACCTAACAATTTAAACTGTCCTTGTGTTCAAAAGAATGGAGGCTTTCTACCATATTCTTCAGCTTCATTAATTGCGGACCTAAAATCTGTTATATATGAGTGTGGTCCTTCTTGTCAATGTCCTTCTAATTGCCGAAACCGAGTTTCCCAAGTTGGCTTGAAGTTTCGGTTGGAGGTTTTTAAAACCAAGAATAAAGGTTGGGCACTTAGATCATGGGATGCTATTCGGGCAGGATCTTTCATATGTGAGTATGCAGGGGAAGTCATAGACAGTGCTAGAGTGGAGGAGGAGCTTGGTAGTGACAATCTCAATGATTACATTTTTGATTCTACTCGCATTTATCAGCAACTGGAAATTTTTCCTGGTGACACTGAAGCTCCAAAAATCCCATCCCCCCTATATATATCAGCAATAAATGAAGGGAATGTTGCTCGGTTTATGAATCACAGCTGCTCTCCAAATGTATTATGGCGTCCAGTCATACATGAAAATAAGAATATGTCAGATCTCCACATTGCTTTCTATGCTATTAGACATATCCCTCCTATGATGGAGTTAACTTATGATTATGGGACAGTTCTTCCTCTCAAAGCAGTTCATAGGAAAAAGAAATGCTTATGTGGATCTGTGAAATGCAGGGGTTACTTTTGTTAA 2124 0.428 MEHHFGQDTAHASGSFDKTRVLNVKPLRTLVPVFPSPSNPASSSSPQGGAPFVCVSPSGPFPSGVAPFYPFFISPESQRLSEQNAPTSTGQRVPATPISTAVPINSFKTPAGAANGNVGSSRKTTRSRGQVTVTEEDGYNNVEIVEVDGDEETGTGRSKRKLQKKMKGQQSGGPGDIDPDAVAADILKSLNPMVFEVLNQPDGSRDSVAYTLMIYEVMRRKLGQIEDSNRAANSGAKRPDLKAGAIMMNKGIRTNSKKHIGPVSGVEIGDIFFFRFELCLVGLHAPSMAGIDYIGTKTSQEEEPLAVSIVSSGGYEDDVEDGDVLVYSGQGGVNRDKGASDQKLERGNLALENSYKRGNEVRVIRGLKDLQHPTGKVYVYDGLYKIQDSWVDRKTGFNVFKYKLFRLPGQPQAYMIWKSIQQWTDRSASRAGVILPDLTSGAEKVPVCLVNDVDTEKGPAYFTYLPNLKNLRPTAPVESSIGCSCVGGCQPNNLNCPCVQKNGGFLPYSSASLIADLKSVIYECGPSCQCPSNCRNRVSQVGLKFRLEVFKTKNKGWALRSWDAIRAGSFICEYAGEVIDSARVEEELGSDNLNDYIFDSTRIYQQLEIFPGDTEAPKIPSPLYISAINEGNVARFMNHSCSPNVLWRPVIHENKNMSDLHIAFYAIRHIPPMMELTYDYGTVLPLKAVHRKKKCLCGSVKCRGYFC 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03559 707 SMART G9a_1 256 410 IPR003105 -
Spst1g03559 707 SUPERFAMILY SET domain 421 687 IPR046341 -
Spst1g03559 707 ProSiteProfiles SET domain profile. 545 681 IPR001214 GO:0005515
Spst1g03559 707 ProSiteProfiles Post-SET domain profile. 691 707 IPR003616 -
Spst1g03559 707 Pfam SET domain 556 681 IPR001214 GO:0005515
Spst1g03559 707 Gene3D - 243 426 IPR036987 -
Spst1g03559 707 Gene3D SET domain 427 706 IPR046341 -
Spst1g03559 707 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 109 706 IPR025794 GO:0016571
Spst1g03559 707 SUPERFAMILY PUA domain-like 243 424 IPR015947 -
Spst1g03559 707 Pfam Pre-SET motif 439 537 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Spst1g03559 707 MobiDBLite consensus disorder prediction 148 179 - -
Spst1g03559 707 SMART preset_2 435 529 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Spst1g03559 707 FunFam Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5 244 425 - -
Spst1g03559 707 ProSiteProfiles YDG domain profile. 261 406 IPR003105 -
Spst1g03559 707 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 91 699 - -
Spst1g03559 707 Pfam SAD/SRA domain 259 410 IPR003105 -
Spst1g03559 707 ProSiteProfiles Pre-SET domain profile. 481 542 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Spst1g03559 707 MobiDBLite consensus disorder prediction 102 132 - -
Spst1g03559 707 SMART set_7 545 687 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03559 Spst-Chr1 44820946 44823069 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03559 6 706 Su(var)3-9 homologs AT1G73100 45.793 0.0 599
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Spst1g03559 SAD_SRA 5.8e-47 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03559 K24405 - gmx:100786650 1222.22