Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03541 ATGTCAGGTGGTAGAGTATCCATGAAGCGCAAGAGGGAGGAGGAGTCACCCTCCAATGAACAAGGGCAAGAAGAGAATCAACTGTCATGCATGTTCTGCAACAAGAAGTTCCCAAGTCCTCAAGCTCTTGGAGGGCACCAGAATGCTCATAAGAAAGAACGATCTCTCCTTAATATAAAGCAAGAGGAACACATCATCAATGCTTTGGGGCATAGTCCTACAACCACAAATGTTTCCTTTCCCTTGCAACCTAGCACACCCTTTTATCCTTTGCCACATTCATACCTTCCCTCCTTCCAAGCTAGGACACCCTTTTATCCTCATTCACGTACATACCTTCCCTTGTTCCAAACTATGGCACCCTTTTATAGTGGTGCACAGATGAACTCCATGCCTCCTCCTGGATATGGCATCAACCTAGGGTTTTCATCTCAATGGATGACGAACCCTCCAAGTGCAGTTGCTGGTCCAAGTAATCCAACTCCAAATTCATCCTCACAAGTTTTGGACTTGACTCTCAAACTTTAA 528 0.4527 MSGGRVSMKRKREEESPSNEQGQEENQLSCMFCNKKFPSPQALGGHQNAHKKERSLLNIKQEEHIINALGHSPTTTNVSFPLQPSTPFYPLPHSYLPSFQARTPFYPHSRTYLPLFQTMAPFYSGAQMNSMPPPGYGINLGFSSQWMTNPPSAVAGPSNPTPNSSSQVLDLTLKL 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03541 175 ProSitePatterns Zinc finger C2H2 type domain signature. 30 50 IPR013087 -
Spst1g03541 175 ProSiteProfiles Zinc finger C2H2 type domain profile. 28 55 IPR013087 -
Spst1g03541 175 MobiDBLite consensus disorder prediction 1 31 - -
Spst1g03541 175 SUPERFAMILY beta-beta-alpha zinc fingers 25 55 IPR036236 -
Spst1g03541 175 PANTHER ZINC FINGER PROTEIN JAGGED 16 157 IPR045320 GO:0003700
Spst1g03541 175 MobiDBLite consensus disorder prediction 151 175 - -
Spst1g03541 175 Gene3D Classic Zinc Finger 5 73 - -
Spst1g03541 175 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03541 Spst-Chr1 44621082 44621609 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03541 6 61 C2H2 Transcription Factor Family AT1G67030 44.643 3.60e-10 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst1g03541 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03541 - - gmx:102667297 109.768