Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03538 ATGGAAGGAGATGGTTATTGTGGGAGTTTTTTTCAGAGGTGCAAGCCTTACATAGCTATGATTTCTCTGCAATTCGGGTTTGCTGGTATGAACATAATCACCAAGGTTTCCCTCAACCGTGGGATGAGCCACTATGTGCTTGTGGTTTATAGACATGCCTTTGCTACTGCAGCTATTGCTCCTTTTGCTCTTGTTCTTGAGAGGAAAGTGAGACCCAAGATTACATTTTTTATGTTCATGCAAATATTCGTGTTGGGTCTACTTGGGCCTGTGATTGATCAGAACTTATACTATGCGGGGTTGAAGTTTACTTCCCCTACCTACTCATGTGCAATAAGCAACATTCTCCCTGCTATGACATTTGTGATGGCTGCTATTTTCAGGATGGAGAAGGTGGACATGAGAAAATTAAGATGCCAAGCCAAGGTGATAGGAACTATAGTAACAGTTGCTGGGGCCATGTTGATGACATTGTACAAAGGGCAAGTCATCAGTTTCTTGGGTTCTCAGTACATGCATCACCCCAGAAATTATGTGCCTGAAAACACCACTGATTCTGGTGAAAAGGATTGGTTCAAGGGCTCTATTCTTCTCATAATTGCCACCCTTGCTTGGGCTTCTTTCTTCATCCTTCAGGCAGTGACACTAAGGAAATACCCTGCTCAGCTCTCTCTCACAGCCCTTGTGTGTGCCTTAGGTACACTGCAGTCAATTGCAGTTACCTTTGTCATGGAGCACAAGGCCTCTGTTTGGCCCATTGGCTGGGATATGAACCTGCTTGCAGCAGCCTATGCTGGAATAATATCATCAGGAATCACCTACTATGTTCAAGGTATAGTCATGCAAAAGAAAGGGCCTGTTTTCGTAACTGCTTTCAGCCCTTTGATGATGATTATAGTAGCCATCATGGGTGCTTTCATTCTTGCAGAAAAAATATATCTTGGAGGGGTCGCTGGAGCTATTCTCATAGTTATGGGACTTTACTCGGTTCTGTGGGGAAAATACAAGGAGAACGAAGAGAAAGAAGCAGAAATGACCATCGAGGTGGTGAAGTGTTGTTTAGAAAATGGGAGGTTGGAGACTGTGATGGAAGATGCTGAAACAAACAACGACATTGAGATGCAAAAGGGTGGTGAAGAAGCCTCCAGAGAATTAAGGGTAGCCATTACTGTTCCTAGAGTTTAA 1185 0.4363 MEGDGYCGSFFQRCKPYIAMISLQFGFAGMNIITKVSLNRGMSHYVLVVYRHAFATAAIAPFALVLERKVRPKITFFMFMQIFVLGLLGPVIDQNLYYAGLKFTSPTYSCAISNILPAMTFVMAAIFRMEKVDMRKLRCQAKVIGTIVTVAGAMLMTLYKGQVISFLGSQYMHHPRNYVPENTTDSGEKDWFKGSILLIIATLAWASFFILQAVTLRKYPAQLSLTALVCALGTLQSIAVTFVMEHKASVWPIGWDMNLLAAAYAGIISSGITYYVQGIVMQKKGPVFVTAFSPLMMIIVAIMGAFILAEKIYLGGVAGAILIVMGLYSVLWGKYKENEEKEAEMTIEVVKCCLENGRLETVMEDAETNNDIEMQKGGEEASRELRVAITVPRV 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03538 394 Pfam EamA-like transporter family 193 331 IPR000620 GO:0016020
Spst1g03538 394 Pfam EamA-like transporter family 17 157 IPR000620 GO:0016020
Spst1g03538 394 SUPERFAMILY Multidrug resistance efflux transporter EmrE 50 160 - -
Spst1g03538 394 PANTHER WAT1-RELATED PROTEIN 15 341 IPR030184 GO:0016020|GO:0022857
Spst1g03538 394 SUPERFAMILY Multidrug resistance efflux transporter EmrE 241 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03538 Spst-Chr1 44575567 44577735 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03538 1 392 Nodulin-like Gene Family AT5G07050 61.404 1.13e-172 486
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03538 - - pvu:PHAVU_001G118300g 729.939