Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03523 ATGAGGGAAGAGGATTCGAATTGGTTTTCGCGATGGGAAGAGGAGCTCCCATCGCCAGAGGAACTCATGCCCCTATCGCAAACCCTAATCACGCCGGATCTAGCCATGGCCTTCGACATCAGAAACCCCCACACCACCGCCAACCCCAACACAGCGCAACAACATCAACATCAACACCAGCAACAACCGCCGCAGCAACAACAGCAACAACCTTCTAACCCTTCCTCGCTCCCCAACCCTCAGCAACCCACCTCCGCGGAGTTCGCCGACTCCGGCGAGCTCGGCTCCGGCACCGCCGGCGAGGAGCCTGCCAGAACCCTCAAGCGCCCACGCCTCGTGTGGACACCACAGCTCCACAAGCGTTTCGTCGACGCCGTTGCCCACCTCGGCATCAAAAACGCTGTTCCCAAGACCATAATGCAGCTCATGAGCGTCGACGGTTTGACGCGAGAAAACGTCGCTAGCCACTTGCAGAAGTACCGTCTCTATCTCAAGCGCATGCAGGGGATTTCCGCTGCTGGGCCTGGTGGTCCCGGCGGGGGTGCCTCCGCAGTCGCCGACCCTGCCACTGACCACCTCTTCGCCAGCTCCCCGGTGCCGGCGCATTTCTTACACCCGGCGACGAGGCCAAATTCGGATCATTTCCTTCCGTTTGTGCCTGTGCCGGCGCTCCACCACCACCAGCAGCAACAGCAGCAGTTGGCTGCGGCTGCGCAGTACCATAGGCAGGTGGGGCATTTCGGGTCGCCCCCGAATGGGCACTTCGAGAACCCTTTCATGTCTAGGCCGAATCTTCAGAGGATGGGGGGTGGTGGTGGTGGTCCTGTGCACAACCACCACCCTGTGAGTGGCTATGTCGAGGACATGGAATCTGCAAATGCTGCCTCTGGAGGTAGAAAGGTTCTTACTCTGTTTCCAACCGGAGATGATTGA 933 0.597 MREEDSNWFSRWEEELPSPEELMPLSQTLITPDLAMAFDIRNPHTTANPNTAQQHQHQHQQQPPQQQQQQPSNPSSLPNPQQPTSAEFADSGELGSGTAGEEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGISAAGPGGPGGGASAVADPATDHLFASSPVPAHFLHPATRPNSDHFLPFVPVPALHHHQQQQQQLAAAAQYHRQVGHFGSPPNGHFENPFMSRPNLQRMGGGGGGPVHNHHPVSGYVEDMESANAASGGRKVLTLFPTGDD 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03523 310 MobiDBLite consensus disorder prediction 262 283 - -
Spst1g03523 310 FunFam Two-component response regulator 105 168 - -
Spst1g03523 310 MobiDBLite consensus disorder prediction 43 91 - -
Spst1g03523 310 Gene3D - 106 168 - -
Spst1g03523 310 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 114 165 IPR017930 -
Spst1g03523 310 SUPERFAMILY Homeodomain-like 106 166 IPR009057 -
Spst1g03523 310 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 3 268 IPR044841 GO:0003700|GO:0006355
Spst1g03523 310 Pfam Myb-like DNA-binding domain 113 161 IPR001005 -
Spst1g03523 310 MobiDBLite consensus disorder prediction 1 18 - -
Spst1g03523 310 MobiDBLite consensus disorder prediction 1 108 - -
Spst1g03523 310 NCBIfam myb-like DNA-binding domain, SHAQKYF class 110 162 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03523 Spst-Chr1 44345481 44346413 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03523 1 310 G2-like Transcription Factor Family AT3G10760 58.689 3.11e-103 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Spst1g03523 Myb_DNA-binding 2.3e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03523 - - gmx:100815363 476.092
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03523 1 44345481 44346413 Spst1g03523 1 44345481 44346413 ECH