Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03519 ATGGCATCAAGACCCACAGTTAAACAACAGGCCAAAGGTGAGGCAGTAGTGGGGGGAGGGAAACAGCAGAAGAAAGGTGTAGCAGATGGAAGAAACCGCAAGGCATTAGGTGATATTGGGAATTTGGTCAATGTAGGAGAAATTGAAATCAATCCTAATCGCCCCATCACAAGGAGTTTTGGAGCTCTACTACTTGCCAAGACACAAGCAGCAGCTAAGAATAATAAGAAACAGGATTCTGCCAATGTGGCTGGACCTCCACCTGTTAATGCAGTTGCAGTGACCAAAAGAGCGGTCCCCAAACCAGGTCCGAAGAAAGTCACTGTAAAACCAAAACCTGAGAAAGCCATTAAAAATGAAGCCATCCCAGATAAGGAGATTCAGAAAGACAAGAAAAGAAAAGGAGATGACAACTACAAGAAGAAATCACGCGCCTTTACTTCAGTGCTCACAGCTCGAAGCAAAGCAGCATCCGGCATAACTAACCACAAACCGAAGGAGCAGGTTATTGACATTGATGCAGGTGATGTTGACAATGAGCTTGCTGCTGTGGAGTATGTTGATGACCTTTACAAGTTCTATAAGCTTGTTGAGAATGAGAACCGCCCTCGTGACTACATAGAATCGCAACCTGATATAAATAAGAGGTCGAGAGCTATACTAGTCAATTGGCTTATAGAAGTCAACACCAAGTTTGAACTTTCACTTGAGACCCTTTACTTGACAATCAATATAATTGATCGGTTCCTAGCAGTTAAGAGTGTTCCAGGGAAGGAACTACAACTGGTTGGCATCAGTGCCATGCTGATGGCATCCAAGTATGAGGAAATCTGGGCCCCTGGGGTTGATAATTTGGTCTGCTTTACAACTTACAGCCATGAACAAATACTAGTCATGGAAAAAATCATACTAGATAAGCTAGAATGGACTTTGACTGTGCCAACACCTCTGGTTTTCCTGGTTCGCTTTATCAAGGCATCAGTCCCAGACCAGGAGTTGGAAAACATGACTCATTTTCTGTCTGAGTTGGGATTGATGCACTATGACACCTTAATGTATAGCCCATCAATGTTTGCTGCCTCGGCAGTCTTTGCAGCTAGATGCACTCTGAATAAGACTCCCCTTTGGAATGAGACACTTAAGCTACACACGGGTTACTCACAAGAACAACTTATGGAATGTGCTAGATTATTGGTGAGTTTCCACTCCATGGTTGGGAATGAAGAGCTGAAGGTTGTGTACAGAAAGTATTCTGATCCTCAGAAAGGAGCTGTTGCTATGCTCCCACCAGCTAAAAATCTTCTGCCTGAAGGTTCTGTCTCATAA 1326 0.4367 MASRPTVKQQAKGEAVVGGGKQQKKGVADGRNRKALGDIGNLVNVGEIEINPNRPITRSFGALLLAKTQAAAKNNKKQDSANVAGPPPVNAVAVTKRAVPKPGPKKVTVKPKPEKAIKNEAIPDKEIQKDKKRKGDDNYKKKSRAFTSVLTARSKAASGITNHKPKEQVIDIDAGDVDNELAAVEYVDDLYKFYKLVENENRPRDYIESQPDINKRSRAILVNWLIEVNTKFELSLETLYLTINIIDRFLAVKSVPGKELQLVGISAMLMASKYEEIWAPGVDNLVCFTTYSHEQILVMEKIILDKLEWTLTVPTPLVFLVRFIKASVPDQELENMTHFLSELGLMHYDTLMYSPSMFAASAVFAARCTLNKTPLWNETLKLHTGYSQEQLMECARLLVSFHSMVGNEELKVVYRKYSDPQKGAVAMLPPAKNLLPEGSVS 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03519 441 Pfam Cyclin, N-terminal domain 190 311 IPR006671 -
Spst1g03519 441 SUPERFAMILY Cyclin-like 313 432 IPR036915 -
Spst1g03519 441 PIRSF Cyclin_A_B_D_E 1 441 IPR046965 GO:0016538|GO:0044772
Spst1g03519 441 ProSitePatterns Cyclins signature. 218 249 IPR006671 -
Spst1g03519 441 Gene3D - 189 427 - -
Spst1g03519 441 FunFam G2/mitotic-specific cyclin-1 301 426 - -
Spst1g03519 441 CDD CYCLIN_AtCycB-like_rpt2 314 430 - -
Spst1g03519 441 MobiDBLite consensus disorder prediction 1 32 - -
Spst1g03519 441 Gene3D - 203 312 - -
Spst1g03519 441 SMART Cyclin_C_2 314 431 IPR004367 -
Spst1g03519 441 Pfam Cyclin, C-terminal domain 314 430 IPR004367 -
Spst1g03519 441 SMART cyclin_7 318 400 IPR013763 -
Spst1g03519 441 SMART cyclin_7 223 305 IPR013763 -
Spst1g03519 441 SUPERFAMILY Cyclin-like 178 311 IPR036915 -
Spst1g03519 441 PANTHER CYCLINS 137 422 IPR039361 -
Spst1g03519 441 MobiDBLite consensus disorder prediction 96 140 - -
Spst1g03519 441 MobiDBLite consensus disorder prediction 107 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03519 Spst-Chr1 44306432 44308809 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03519 1 435 Core Cell Cycle Gene Families AT4G37490 52.561 8.58e-138 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03519 K21777 - gmx:547919 600.897