Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03518 ATGCATCAGATATTGAATGAGTGGCTCTTTTGGAATTTCATTGGTGAAGCAGTAATAGGGGGAGGAGAACAGCCGAAGAAGAAGGATGTAGCGAATGGAAGGAACCGCAAGGCATTAGGTGAAGTGGGGAATGTGGCCAATGTAAGAGGAGTTGAAGGCAAGCCCAATCGCCCCATCACAAGGAGAGTTGGTGCCAATGCACCAGTATCAGCCGCTGCTAAAAACAAGAAACAAGCTTGTAAAAATGTGACTGGTCCTCCTCCTGTTGCTAAGGGAGTTGCATTGGCAAAGAAAGCTGCCACCAAACAGGGTCAGAGGAAAGTCACCGTAAAACCAAAGCCTGAGGAAGTCAATGGTATGGAAGCTAGTGCAGACAAGGAGTTCCAGAAAGACAAGAAACAAGCTTGTGCTAATATGGCTGGACGACCTCCTACTGTTTCTGATAGAATTGCAGTGGCCAAAAGAGTGGCTGCCAAACCGGGTCAGAAGAAAGTGACTGTAAAACCAAAGCCTGAGGAAGTCATTATCATTGAAGCTAATCAGATGAACAAGAAAAAGGAAAATGATGGCAACTTCAAGAAGAAACCACATCCTTTTACTTCGGTGCTCACAGCTCGAAGCAAGGCAGCATGCGGCATAACTAACAAACTGAGGGAGCAGATTATTGACATTGATGCTGGTGATATTGGCAATGAGCTTGCTGCTGTGGAGTATATTGATGACATTTACAAGTTCTGTAAGCTTGTTGAGAATGAGAACCGCCCCCATGACTATATAGACTCACAACCTGAGGTGAATGAGAGAATGAGAGCTATACTGGTTGATTGGCTGATAGAAGTCAACACCAAGTTTGACCTTTCACCTGAGACCCTTTACTTGACAATCAATATAATTGATCGGTTCCTAGCAGTTAAGAATGTTCCGAGGAGAGAAATGCAATTGGTTGGTATCAGTGCCATGCTGATTGCAAGCAAATATGAAGAAGTTAGTAGCTTAGTCTTCCTCTCAGATGGGGCTTACACTCACGAACAGATACTTGTTATGGAGAAAATCATACTGGGCAAGCTTGAATGGAATTTAACTGTGCCAACACCTTTGGTTTTCCTAGTTCGTTTTATCAAGGCATCAGTCCCAGATCAAGAGTTGGAAAATATGGCTCATTTTCTGTCTGAGTTGGGAATGATGAATTATGCAACCTTAAGGTATTGCCCATCAATGGTTGCTGCTTCGGCAGTGTATGCAGCTAGATGCACTCTGAATAAGGCTTCCTTCTGGAGTGAGACACTTAAGCTGCACACGGGCTACTCACAAGAACAACTTATGGATTGTGGTAGATCATTGGTGAGCTTCCACTCCATGTATGGGAAGGGAAAGCTGAAGTTTGTGCACGGAAAGTATTCTGATCCTCATAAAGGAGCTGTTGCTATGCTCCCACCAGCTAAAAATCTTCTGCCTCCCTATAGAGTTAATGAAGAAAAGGGAGGAGCAGGAATTGAATACAAAACTGATATATAA 1515 0.437 MHQILNEWLFWNFIGEAVIGGGEQPKKKDVANGRNRKALGEVGNVANVRGVEGKPNRPITRRVGANAPVSAAAKNKKQACKNVTGPPPVAKGVALAKKAATKQGQRKVTVKPKPEEVNGMEASADKEFQKDKKQACANMAGRPPTVSDRIAVAKRVAAKPGQKKVTVKPKPEEVIIIEANQMNKKKENDGNFKKKPHPFTSVLTARSKAACGITNKLREQIIDIDAGDIGNELAAVEYIDDIYKFCKLVENENRPHDYIDSQPEVNERMRAILVDWLIEVNTKFDLSPETLYLTINIIDRFLAVKNVPRREMQLVGISAMLIASKYEEVSSLVFLSDGAYTHEQILVMEKIILGKLEWNLTVPTPLVFLVRFIKASVPDQELENMAHFLSELGMMNYATLRYCPSMVAASAVYAARCTLNKASFWSETLKLHTGYSQEQLMDCGRSLVSFHSMYGKGKLKFVHGKYSDPHKGAVAMLPPAKNLLPPYRVNEEKGGAGIEYKTDI 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03518 504 SMART cyclin_7 367 449 IPR013763 -
Spst1g03518 504 SMART cyclin_7 275 354 IPR013763 -
Spst1g03518 504 SMART Cyclin_C_2 363 480 IPR004367 -
Spst1g03518 504 SUPERFAMILY Cyclin-like 362 481 IPR036915 -
Spst1g03518 504 Gene3D - 256 355 - -
Spst1g03518 504 CDD CYCLIN_AtCycB-like_rpt2 363 479 - -
Spst1g03518 504 PANTHER CYCLINS 184 460 IPR039361 -
Spst1g03518 504 Pfam Cyclin, N-terminal domain 241 361 IPR006671 -
Spst1g03518 504 SUPERFAMILY Cyclin-like 230 360 IPR036915 -
Spst1g03518 504 Gene3D - 356 485 - -
Spst1g03518 504 FunFam G2/mitotic-specific cyclin 254 357 - -
Spst1g03518 504 Pfam Cyclin, C-terminal domain 363 479 IPR004367 -
Spst1g03518 504 ProSitePatterns Cyclins signature. 270 301 IPR006671 -
Spst1g03518 504 PIRSF Cyclin_A_B_D_E 15 150 IPR046965 GO:0016538|GO:0044772
Spst1g03518 504 PIRSF Cyclin_A_B_D_E 122 491 IPR046965 GO:0016538|GO:0044772
Spst1g03518 504 FunFam G2/mitotic-specific cyclin-1 358 475 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03518 Spst-Chr1 44302385 44304603 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03518 31 441 Core Cell Cycle Gene Families AT3G11520 49.409 1.34e-120 357
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03518 K21777 - gmx:547920 572.392