Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Spst1g03514 | ATGAAGTCTTGGTCAGTGGATGACTGGAGGAAGTATTTTGGGTCGGCGAATTCGAATATATTTGACATAATTGAGAACGCGATAATCGTGGCGGCTTCGGATTGTCCGAAGGAGTTTAGAGTGAAGAGGGATACGATTGCGGAGAGGCTGTTCTCTTCCAAGTTGACTCGCTGTGTGGGGTGTGATCGTGTGGAGTTGGCTGTGAGTGGAGTTGGTAAAGAGATTGATGACGGCAATTGCAAGAATGGGGTTGACACAGATGGGGGTGAGTTAGCTGGGGCAAGCAAAGAGAGCGAGGTCAATGATGGTGGAGATGGGAATGCTGAGATTGATGTGAACGGTGTTAGCAACTATAGTTTTGGCGAGGCGGAGGCATTAACTGATGAAATAGATGAAGAGACTCAGTATTTAGGCGAGATTTTGAGGATCAAAGATGTTCTGCTTAACCGTGAAGAGTCTGACTCTGTGATATTTGAATCGTTGAGGAGGCTTCAACTGATGGAGCTCAGCATGGATTGTCTGAAGGCAACTGAGATCGGAAAGGCTGTTAATCCTCTCCGAAAACGCCGATCAGAGGATATTCGTCTACTTGCACAGACACTTATCGATGGCTGGAAACAAATGGTTGATGAATGGGTGATTGCCACTACTACCACAGCTATTGCAGCTTCAGATGAAGGCACACCAGATTCAGTTAATCCATCTGTTGTTGATGATGAAGAAGAAGGACTTCCATCACCACCTATGGATGAAGGGGCTTTCTTTGTTGCTCCAACTGGTTCCATAAAACTTTCAGAGTTCTTTGATGGCATGGACGATGATGGAAATCCTCGACCAAGTGGCCCATCCCACAAGAACCGTGACAATAATGGCAGAAAGCCAACCATCCCTAACAGGGAGATTAAGAGTCAACAAGCAAAGAAAAATGAGACTGCTGTGCCTGTGAGGCCAATTAAGCCAGTAGCCACTGATTCTGGCCGTGGCAAACCCCCTCTATCAAAAATGCAGGGGAAGAGTAATGTGGAGCCAAAGATGCAGCAAAGAATAGAGAACAATTCAATGACAAGGAGACCTCCCAGTGGTCAACTGGATAAATCCATGCATTCAGATGATGTGGCTACCCAACAAAAACTAGAAGCCACCAAGAGAAAACTTCAAGAAAGTTATCAACAAGCTGAAAATGCCAAGAGGCAGAGAACAATACAAGTTATGGAAATAAATGATCTCCCCAAACATGTTGTCCACCGAAATCCACATCAGAAGCCCGGTTATCACAATAGGAACCGGCCTTATACTCGAAGATAG | 1305 | 0.4544 | MKSWSVDDWRKYFGSANSNIFDIIENAIIVAASDCPKEFRVKRDTIAERLFSSKLTRCVGCDRVELAVSGVGKEIDDGNCKNGVDTDGGELAGASKESEVNDGGDGNAEIDVNGVSNYSFGEAEALTDEIDEETQYLGEILRIKDVLLNREESDSVIFESLRRLQLMELSMDCLKATEIGKAVNPLRKRRSEDIRLLAQTLIDGWKQMVDEWVIATTTTAIAASDEGTPDSVNPSVVDDEEEGLPSPPMDEGAFFVAPTGSIKLSEFFDGMDDDGNPRPSGPSHKNRDNNGRKPTIPNREIKSQQAKKNETAVPVRPIKPVATDSGRGKPPLSKMQGKSNVEPKMQQRIENNSMTRRPPSGQLDKSMHSDDVATQQKLEATKRKLQESYQQAENAKRQRTIQVMEINDLPKHVVHRNPHQKPGYHNRNRPYTRR | 434 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Spst1g03514 | 434 | Gene3D | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 | 129 | 221 | IPR035441 | - | |
Spst1g03514 | 434 | SMART | TFS2_5 | 137 | 211 | IPR003617 | GO:0005634 | |
Spst1g03514 | 434 | MobiDBLite | consensus disorder prediction | 265 | 384 | - | - | |
Spst1g03514 | 434 | MobiDBLite | consensus disorder prediction | 412 | 434 | - | - | |
Spst1g03514 | 434 | PANTHER | MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED | 3 | 422 | IPR044805 | - | |
Spst1g03514 | 434 | MobiDBLite | consensus disorder prediction | 339 | 362 | - | - | |
Spst1g03514 | 434 | MobiDBLite | consensus disorder prediction | 416 | 434 | - | - | |
Spst1g03514 | 434 | ProSiteProfiles | TFIIS N-terminal domain profile. | 138 | 212 | IPR017923 | - | |
Spst1g03514 | 434 | CDD | TFIIS_I | 139 | 210 | - | - | |
Spst1g03514 | 434 | MobiDBLite | consensus disorder prediction | 267 | 295 | - | - | |
Spst1g03514 | 434 | MobiDBLite | consensus disorder prediction | 296 | 310 | - | - | |
Spst1g03514 | 434 | SUPERFAMILY | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 | 136 | 213 | IPR035441 | - | |
Spst1g03514 | 434 | Coils | Coil | 375 | 402 | - | - | |
Spst1g03514 | 434 | MobiDBLite | consensus disorder prediction | 370 | 384 | - | - | |
Spst1g03514 | 434 | Pfam | TFIIS helical bundle-like domain | 161 | 209 | IPR017923 | - | |
Spst1g03514 | 434 | MobiDBLite | consensus disorder prediction | 224 | 251 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Spst1g03514 | Spst-Chr1 | 44261247 | 44263881 | Transposed |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | IWS1 | Spst1g03514 | Med26 | 1.9e-09 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Spst1g03514 | - | - | gmx:100799367 | 605.134 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Spst1g03514 | 1 | 44261247 | 44263881 | Spst1g03514 | 1 | 44261247 | 44263881 | ECH | |
Spst1g03514 | 1 | 44261247 | 44263881 | Spst7g00479 | 7 | 3965041 | 3975644 | PCT |