Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03514 ATGAAGTCTTGGTCAGTGGATGACTGGAGGAAGTATTTTGGGTCGGCGAATTCGAATATATTTGACATAATTGAGAACGCGATAATCGTGGCGGCTTCGGATTGTCCGAAGGAGTTTAGAGTGAAGAGGGATACGATTGCGGAGAGGCTGTTCTCTTCCAAGTTGACTCGCTGTGTGGGGTGTGATCGTGTGGAGTTGGCTGTGAGTGGAGTTGGTAAAGAGATTGATGACGGCAATTGCAAGAATGGGGTTGACACAGATGGGGGTGAGTTAGCTGGGGCAAGCAAAGAGAGCGAGGTCAATGATGGTGGAGATGGGAATGCTGAGATTGATGTGAACGGTGTTAGCAACTATAGTTTTGGCGAGGCGGAGGCATTAACTGATGAAATAGATGAAGAGACTCAGTATTTAGGCGAGATTTTGAGGATCAAAGATGTTCTGCTTAACCGTGAAGAGTCTGACTCTGTGATATTTGAATCGTTGAGGAGGCTTCAACTGATGGAGCTCAGCATGGATTGTCTGAAGGCAACTGAGATCGGAAAGGCTGTTAATCCTCTCCGAAAACGCCGATCAGAGGATATTCGTCTACTTGCACAGACACTTATCGATGGCTGGAAACAAATGGTTGATGAATGGGTGATTGCCACTACTACCACAGCTATTGCAGCTTCAGATGAAGGCACACCAGATTCAGTTAATCCATCTGTTGTTGATGATGAAGAAGAAGGACTTCCATCACCACCTATGGATGAAGGGGCTTTCTTTGTTGCTCCAACTGGTTCCATAAAACTTTCAGAGTTCTTTGATGGCATGGACGATGATGGAAATCCTCGACCAAGTGGCCCATCCCACAAGAACCGTGACAATAATGGCAGAAAGCCAACCATCCCTAACAGGGAGATTAAGAGTCAACAAGCAAAGAAAAATGAGACTGCTGTGCCTGTGAGGCCAATTAAGCCAGTAGCCACTGATTCTGGCCGTGGCAAACCCCCTCTATCAAAAATGCAGGGGAAGAGTAATGTGGAGCCAAAGATGCAGCAAAGAATAGAGAACAATTCAATGACAAGGAGACCTCCCAGTGGTCAACTGGATAAATCCATGCATTCAGATGATGTGGCTACCCAACAAAAACTAGAAGCCACCAAGAGAAAACTTCAAGAAAGTTATCAACAAGCTGAAAATGCCAAGAGGCAGAGAACAATACAAGTTATGGAAATAAATGATCTCCCCAAACATGTTGTCCACCGAAATCCACATCAGAAGCCCGGTTATCACAATAGGAACCGGCCTTATACTCGAAGATAG 1305 0.4544 MKSWSVDDWRKYFGSANSNIFDIIENAIIVAASDCPKEFRVKRDTIAERLFSSKLTRCVGCDRVELAVSGVGKEIDDGNCKNGVDTDGGELAGASKESEVNDGGDGNAEIDVNGVSNYSFGEAEALTDEIDEETQYLGEILRIKDVLLNREESDSVIFESLRRLQLMELSMDCLKATEIGKAVNPLRKRRSEDIRLLAQTLIDGWKQMVDEWVIATTTTAIAASDEGTPDSVNPSVVDDEEEGLPSPPMDEGAFFVAPTGSIKLSEFFDGMDDDGNPRPSGPSHKNRDNNGRKPTIPNREIKSQQAKKNETAVPVRPIKPVATDSGRGKPPLSKMQGKSNVEPKMQQRIENNSMTRRPPSGQLDKSMHSDDVATQQKLEATKRKLQESYQQAENAKRQRTIQVMEINDLPKHVVHRNPHQKPGYHNRNRPYTRR 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03514 434 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 129 221 IPR035441 -
Spst1g03514 434 SMART TFS2_5 137 211 IPR003617 GO:0005634
Spst1g03514 434 MobiDBLite consensus disorder prediction 265 384 - -
Spst1g03514 434 MobiDBLite consensus disorder prediction 412 434 - -
Spst1g03514 434 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 3 422 IPR044805 -
Spst1g03514 434 MobiDBLite consensus disorder prediction 339 362 - -
Spst1g03514 434 MobiDBLite consensus disorder prediction 416 434 - -
Spst1g03514 434 ProSiteProfiles TFIIS N-terminal domain profile. 138 212 IPR017923 -
Spst1g03514 434 CDD TFIIS_I 139 210 - -
Spst1g03514 434 MobiDBLite consensus disorder prediction 267 295 - -
Spst1g03514 434 MobiDBLite consensus disorder prediction 296 310 - -
Spst1g03514 434 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 136 213 IPR035441 -
Spst1g03514 434 Coils Coil 375 402 - -
Spst1g03514 434 MobiDBLite consensus disorder prediction 370 384 - -
Spst1g03514 434 Pfam TFIIS helical bundle-like domain 161 209 IPR017923 -
Spst1g03514 434 MobiDBLite consensus disorder prediction 224 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03514 Spst-Chr1 44261247 44263881 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Spst1g03514 Med26 1.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03514 - - gmx:100799367 605.134
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03514 1 44261247 44263881 Spst1g03514 1 44261247 44263881 ECH
Spst1g03514 1 44261247 44263881 Spst7g00479 7 3965041 3975644 PCT