Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03512 ATGCATTCGGGGGACGACGACCCAGGTTCAGGCTCCTCATCTTCAGACAAATTCCTGCTCGGCTTTATTATGGCCAACATCGTAGGCGGGCCGCACTACGACGACACCCTCCGCGGCCGCACCCTCGTCCTCCTCCTCCGCGAGCCCTACAACTTCCACGACCCCAACGCCATCCAAGTCCTTAATATCCACGCTCACCCCGTCGGCTACATTGAACGCGGCGTCGCCGCCGTTCTCTCCCCTCTCATTGACGACAACCTCATCACCATCGAAGCCATCGTCCCAGACGCCCGCAAAACCTACCGAATCCCCTGCCAAATCCACATCTTCGCCCGCCTCCACGACTTTGACGCGGTGAAAGTAGCCATCTCCCGTTCCTCCCTCAGACTCATCACCGAGTCCGAAGCCGCCTTCACCCTCTCAGACTCCGCTGCTGTTAAGGCTACCAGGGCGGAGACGAAGTCTAAGTCCGTCGACGCCATTTTCGACCTCCTCAACACTAACCTCGCCAATAAGAACCGCGCCGTCGATATCTTGGAGCCACCCAGGAGCATCATCAGGACCAAGCTTCTCCCTCATCAGAAAGAGGGCCTCGCGTGGCTCGTTCGCCGTGAAAATGCTGATGACATGCCACCCTTCTGGGAAGAAAACAATGGCAAGTTCGTAAATAGCTTAACCGCTTATCAAACCGATACAAGGCCTGAACCTCTGCGAGGTGGCATCTTCGCAGATGAGATGGGGTTAGGAAAGACCTTAACTCTGCTTTCTTTAATTGCTTTTGATAAAATGAGCCAAATGGGTTTCTCTAAGAAATCGAGATCGGACAGAAAGTCGGTTACTTTAGGGAAACGACCCAAGAATGAAGATGAGTGCTCCCTTCGAACCGGAATGAAAACAAATGCAACGTTGGTGGTGTGTCCTCCTTCTGTTATGTCGTCATGGATAACGCAATTGGAGGATCACACTGTGCCTGGTGCACTGAAGACTTACTTGTATTATGGGGAAAGAAGGGCAAAGGATACCGAGGAGCTTAAGAAGCATGATTTGGTGTTGACTACTTACACTACTTTGTCTAATGAATCGGGATCTATGCCGGGGAAACAAATGGAGTGGCGTAGAATTATATTGGACGAAGCACACACCATCAAAAATTTCTCTGCAAAACTGAGTATGGTGGTTTCCGGGTTGAATGCTAAGTACAGATGGGCAGTCACAGGGACACCAATTCAAAGTGGTTGCATTGATTTGTTTTCTATCATGGTCTTTTTGCGGTTTGATCCGTTTTCGGAGCGAAAATATTGGAGAAGGTTGGTGCAACGCCCTCTTAATCAGGGCAAAGAAAAAGGGCTCACCCGATTGCAGGTTTTGATGGAAGCAATTGCTTTACGAAGAACAAAAGATATGGCATTGCTGTGTCTGCCACCTAAAACCGTTGAGATTTGTTACGTTGAGCTTTCTATGGAAGAACGTCGACGTTATGATCGTGAGAAAGGGGAAATAAAGGCATTGTTGACAAGTATTTACTGTAGGCGTAATGAGGGTTCCGAGTATACTGCGATGCTAAGTAGTATTCTAAGACTTCGCCAAATCTGTACTGATTCGAAGTTGTGTAAATATCAGTCACTACACAACATTGCAAATATGGAAGGAGCAGCTAGTTCGTATAATCCTGAATTGCTGCAAACATTACTTGGGCAGCTTCAAGATGGCGAAGATTTTGATTGTCCAATTTGTATATCAACTGCAGTGGATATTGTGATCACACGTTGTGCTCACTTTTTCTGCCGAGACTGTATTCTGACATCTATACAAAAGAAAAACTCCAGTGGTTGTCCTATTTGCAGGCGAAAACTCTCAGAATCTGAATTGTTCTCCCCTCCCGAGCCTTCGGAGACTGACAGTGGTGAACTGAGCTCAAAATCAGAAACACCGTTATCTTCCAAGGTTTCTACCCTGATAAAACTTCTTAAAGAATCAAGGGCCCATGATCCAGCTCTGAAGTCAGTTGTATTCTCACAATTTCGAAAGTTGCTGCTGTTACTTGAAGAGCCTCTGAGTGAAGCTGGTTTCAAGACTTCGCGTCTTGATGGGACAATGAATGCTAAAAACAGGGCTAATGTTATCGAGCAGTTTCAACTCCAAGGAAGTGATAGCCCAACAGTTCTGCTTGCAAGCCTCAGGGCTTCAAGTGCAGGTATAAATCTCACAGCTGCCTCTAGACTCTACTTCATGGAGCCATGGTGGAACCATGCAGTTGAGGAACAGGCAATGGATCGTGTCCACCGCATTGGACAGGAAAAGCCTGTGAAGATTGTTCGATTCATTGCTCAAAACAGCATTGAAGAGAGAATGCTGTTGTTGCAGGAGAAGAAGAAACAACTACCCAGGGAAGAATCATCTGAGACGGGATCAGAGGGCATGGGCATTGCTGATATGAGATTCCTTCTAGATTGCGACAGATGTTATGATGTTCTTCTTTATTCTCATGGAGAATCTGGACTTCCTATAAATACTATCTCTCATTCTCATGGAGGTATAAACCTTAAACCAAATATTATTGGTCCAAGAAATTATGGTAAAGAGTAA 2586 0.4667 MHSGDDDPGSGSSSSDKFLLGFIMANIVGGPHYDDTLRGRTLVLLLREPYNFHDPNAIQVLNIHAHPVGYIERGVAAVLSPLIDDNLITIEAIVPDARKTYRIPCQIHIFARLHDFDAVKVAISRSSLRLITESEAAFTLSDSAAVKATRAETKSKSVDAIFDLLNTNLANKNRAVDILEPPRSIIRTKLLPHQKEGLAWLVRRENADDMPPFWEENNGKFVNSLTAYQTDTRPEPLRGGIFADEMGLGKTLTLLSLIAFDKMSQMGFSKKSRSDRKSVTLGKRPKNEDECSLRTGMKTNATLVVCPPSVMSSWITQLEDHTVPGALKTYLYYGERRAKDTEELKKHDLVLTTYTTLSNESGSMPGKQMEWRRIILDEAHTIKNFSAKLSMVVSGLNAKYRWAVTGTPIQSGCIDLFSIMVFLRFDPFSERKYWRRLVQRPLNQGKEKGLTRLQVLMEAIALRRTKDMALLCLPPKTVEICYVELSMEERRRYDREKGEIKALLTSIYCRRNEGSEYTAMLSSILRLRQICTDSKLCKYQSLHNIANMEGAASSYNPELLQTLLGQLQDGEDFDCPICISTAVDIVITRCAHFFCRDCILTSIQKKNSSGCPICRRKLSESELFSPPEPSETDSGELSSKSETPLSSKVSTLIKLLKESRAHDPALKSVVFSQFRKLLLLLEEPLSEAGFKTSRLDGTMNAKNRANVIEQFQLQGSDSPTVLLASLRASSAGINLTAASRLYFMEPWWNHAVEEQAMDRVHRIGQEKPVKIVRFIAQNSIEERMLLLQEKKKQLPREESSETGSEGMGIADMRFLLDCDRCYDVLLYSHGESGLPINTISHSHGGINLKPNIIGPRNYGKE 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03512 861 Pfam Helicase conserved C-terminal domain 648 764 IPR001650 -
Spst1g03512 861 SUPERFAMILY RING/U-box 558 621 - -
Spst1g03512 861 Pfam Zinc finger, C3HC4 type (RING finger) 572 619 - -
Spst1g03512 861 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 170 464 IPR027417 -
Spst1g03512 861 CDD SF2_C_SNF 637 775 - -
Spst1g03512 861 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 369 798 IPR027417 -
Spst1g03512 861 ProSitePatterns Zinc finger RING-type signature. 590 599 IPR017907 -
Spst1g03512 861 SMART HIRAN_2 20 113 IPR014905 GO:0003676|GO:0008270|GO:0016818
Spst1g03512 861 SMART ring_2 575 614 IPR001841 -
Spst1g03512 861 Pfam SNF2-related domain 193 535 IPR000330 GO:0005524|GO:0140658
Spst1g03512 861 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 648 802 IPR001650 -
Spst1g03512 861 Pfam HIRAN domain 27 111 IPR014905 GO:0003676|GO:0008270|GO:0016818
Spst1g03512 861 Gene3D - 162 472 IPR038718 -
Spst1g03512 861 SMART helicmild6 679 764 IPR001650 -
Spst1g03512 861 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 231 426 IPR014001 -
Spst1g03512 861 SMART ultradead3 186 440 IPR014001 -
Spst1g03512 861 MobiDBLite consensus disorder prediction 271 291 - -
Spst1g03512 861 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 557 642 IPR013083 -
Spst1g03512 861 Gene3D - 11 130 - -
Spst1g03512 861 MobiDBLite consensus disorder prediction 625 643 - -
Spst1g03512 861 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 146 815 - -
Spst1g03512 861 MobiDBLite consensus disorder prediction 623 643 - -
Spst1g03512 861 Gene3D - 474 816 IPR027417 -
Spst1g03512 861 ProSiteProfiles Zinc finger RING-type profile. 575 615 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03512 Spst-Chr1 44231201 44240047 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03512 15 797 RAD5 or RAD16-like Gene Family AT5G05130 52.774 0.0 828
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Spst1g03512 SNF2_N 2e-73 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03512 K15711 - gmx:100791783 1067.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03512 1 44231201 44240047 Spst1g03512 1 44231201 44240047 ECH