Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03511 ATGCACATATCTCACATAGTTTGTTTTCCTTTTGTACCCGCTTTGGATTCAGTGGATTTGAACCCGGACCCACTGAAGACCCTGCGAACCATCTCACAACTTCGAAAGAGTGAAATGGCATCAAGTTCAATGTCAGCCTCAGGCTCATGGAGTGTTAAGGACAACAAGGCCTTTGAGAAGGCTCTTGCTGTTTATGACAAGGACACTCCTGACCGTTGGTACAATGTTGCCCATGCTGTCGGTGGCAAAACTCCTGAGGAAGTGAAGAGACACTATGAACTCCTCGTCCAGGATGTTAAGCATATCGAGTCAGGTCGAGTGCCATTCCCAAATTACAAGAAAACTGCAGGGGCTGATCATGAGGAGAAAAGGTATCATTCCTTCCAATTATAG 393 0.4606 MHISHIVCFPFVPALDSVDLNPDPLKTLRTISQLRKSEMASSSMSASGSWSVKDNKAFEKALAVYDKDTPDRWYNVAHAVGGKTPEEVKRHYELLVQDVKHIESGRVPFPNYKKTAGADHEEKRYHSFQL 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03511 130 FunFam Transcription factor SRM1 42 109 - -
Spst1g03511 130 CDD SANT 56 96 IPR001005 -
Spst1g03511 130 SUPERFAMILY Homeodomain-like 48 104 IPR009057 -
Spst1g03511 130 ProSiteProfiles Myb-like domain profile. 42 96 IPR001005 -
Spst1g03511 130 ProSiteProfiles SANT domain profile. 45 100 IPR017884 -
Spst1g03511 130 SMART sant 46 98 IPR001005 -
Spst1g03511 130 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 39 122 IPR044636 GO:0003700
Spst1g03511 130 Gene3D - 40 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03511 Spst-Chr1 44223541 44224895 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Spst1g03511 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03511 - - gmx:100818368 160.614