Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Spst1g03508 | ATGGCGAAGCGTTTGATTCCACTGTTCAATCGTGTTTTGGTGGAGAAAATCGTGCCTCCATCAAAGACCAACGCTGGCATTTTATTACCGGAGAAATCCTCCAAGCTGAATTCCGGAAAAGTTATTGCTGTTGGACCTGGCATTCACAGTAAGGATGGGAAGCTAATTCCAGTGGCTGTTAACGAAGGCGATACTGTTCTTTTGCCAGAGTATGGGGGAACTGAGGTGAAGCTTGACAACAAAGAGTATCATTTATATAGAGACGATGATATTTTGGGGACACTGCACGATTGA | 294 | 0.4422 | MAKRLIPLFNRVLVEKIVPPSKTNAGILLPEKSSKLNSGKVIAVGPGIHSKDGKLIPVAVNEGDTVLLPEYGGTEVKLDNKEYHLYRDDDILGTLHD | 97 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Spst1g03508 | 97 | Gene3D | GroES chaperonin | 1 | 97 | IPR037124 | GO:0006457 | |
| Spst1g03508 | 97 | PANTHER | 10 KDA HEAT SHOCK PROTEIN | 1 | 94 | IPR020818 | GO:0005524|GO:0006457|GO:0044183 | |
| Spst1g03508 | 97 | FunFam | 10 kDa chaperonin, mitochondrial | 1 | 97 | - | - | |
| Spst1g03508 | 97 | Pfam | Chaperonin 10 Kd subunit | 5 | 94 | IPR020818 | GO:0005524|GO:0006457|GO:0044183 | |
| Spst1g03508 | 97 | SUPERFAMILY | GroES-like | 3 | 96 | IPR011032 | - | |
| Spst1g03508 | 97 | SMART | Cpn10_2 | 4 | 95 | IPR020818 | GO:0005524|GO:0006457|GO:0044183 | |
| Spst1g03508 | 97 | Hamap | Co-chaperonin GroES [groES]. | 4 | 96 | IPR020818 | GO:0005524|GO:0006457|GO:0044183 | |
| Spst1g03508 | 97 | PRINTS | 10kDa chaperonin signature | 82 | 95 | IPR020818 | GO:0005524|GO:0006457|GO:0044183 | |
| Spst1g03508 | 97 | PRINTS | 10kDa chaperonin signature | 26 | 47 | IPR020818 | GO:0005524|GO:0006457|GO:0044183 | |
| Spst1g03508 | 97 | PRINTS | 10kDa chaperonin signature | 5 | 20 | IPR020818 | GO:0005524|GO:0006457|GO:0044183 | |
| Spst1g03508 | 97 | PRINTS | 10kDa chaperonin signature | 61 | 73 | IPR020818 | GO:0005524|GO:0006457|GO:0044183 | |
| Spst1g03508 | 97 | CDD | cpn10 | 4 | 95 | IPR020818 | GO:0005524|GO:0006457|GO:0044183 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Spst1g03508 | Spst-Chr1 | 44166819 | 44168583 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Spst1g03508 | 3 | 96 | Calmodulin-binding Proteins | AT5G20720 | 38.542 | 7.73e-12 | 57.4 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Spst1g03508 | K04078 | - | gmx:100306384 | 191.045 |