Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03501 ATGCCTTACACGGTCCGAGAGAACCTTTCGATCGGAAACATCGGCGATGCGGCGGAGATTCTCCAAAAAGATACCGCTCACAGCGTCACGCACATTCTGTCCGTCCTCAGCTCTGCCTCCATCTCCTTCTTCTCCGAATGGCGTCCCAATCTCTCCATCCAGGCCAAGGAAATCACCAAAGTTCACGTGGCGGACTCCGCCGCCGGCTCCTACAAACCGGCGCTCTTGCCGCACAAGCTCCTCTACTCGCTCGAGTACGCCGGCCGCGACCTGAAGCTCGTGAGGATGGCCGTGCCTCTCCGAGACACCGAGAACGAGAACTTGTTGGATTACCTGGAAGTTTGCATCGATTTCATTGAGCGCGGACGGAAGGAAGGTTCCGTTCTCGTCCACTGTTTTGCCGGAGTTTCCAGAAGTGCGGCGGTTATTACGGCTTATTTGATGAGAACCGAACGTCTATCTGTAGAAGATGCTCTTGAATCGTTGAGGCAGAGCTGTGAAAATGTTTGTCCCAATGATGGTTTTCTAGAGCAGTTGAAACTGTTTGAGGGGATGGGTTTCAAGGTTGATCACTCCAGCCCTATATACAAGCGCTTTCGTCTAAAAATGCTACGTGAAAGTCTTTTATCAGGGTTGACGATAGACAGTTCTAAACTAGGTGCAGATCCTGGCATGCTTGTTGAAATTTCTTCTGGGGCAGAAGAAACTACAAAAGTCGAAAATAATCGTAGACCTACATATCGCTGTAGGAAGTGCCGACGAGTTGTTGCATTGCATGAACATGTCATAGATCATGTTCCTGGTGAGGGTGAGACAGCCTTTGCGTGGAACAAACGAAGAGGTGGCAACCCTTTCAACAAATCTAATGAATCTGAGTGTTCATCCATATTTATTGAGCCTCTACGGTGGATGAAAGCTGTTGAGGAAGGTGCATTGGAGGGAAAGCTGTCCTGTGCTCATTGTGATGCCCGTTTGGGATACTTCACTTGGGCAGGCATACAATGCAGCTGCGGAAGCTGGATAACCCCAGCTTTTCAACTCCACAAAAGCCGGATAGACATAAGCCCCATGTAA 1074 0.4963 MPYTVRENLSIGNIGDAAEILQKDTAHSVTHILSVLSSASISFFSEWRPNLSIQAKEITKVHVADSAAGSYKPALLPHKLLYSLEYAGRDLKLVRMAVPLRDTENENLLDYLEVCIDFIERGRKEGSVLVHCFAGVSRSAAVITAYLMRTERLSVEDALESLRQSCENVCPNDGFLEQLKLFEGMGFKVDHSSPIYKRFRLKMLRESLLSGLTIDSSKLGADPGMLVEISSGAEETTKVENNRRPTYRCRKCRRVVALHEHVIDHVPGEGETAFAWNKRRGGNPFNKSNESECSSIFIEPLRWMKAVEEGALEGKLSCAHCDARLGYFTWAGIQCSCGSWITPAFQLHKSRIDISPM 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03501 357 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 106 164 IPR000387 GO:0016311|GO:0016791
Spst1g03501 357 ProSitePatterns Tyrosine specific protein phosphatases active site. 130 140 IPR016130 GO:0016311|GO:0016791
Spst1g03501 357 FunFam Dual specificity protein phosphatase 12-like 4 205 - -
Spst1g03501 357 SMART dsp_5 1 185 IPR020422 GO:0006470|GO:0008138
Spst1g03501 357 CDD DSP_DUSP12 5 190 - -
Spst1g03501 357 Pfam Dual specificity phosphatase, catalytic domain 95 183 IPR000340 GO:0008138|GO:0016311
Spst1g03501 357 PIRSF DUSP12 85 357 IPR016278 GO:0006470|GO:0008138
Spst1g03501 357 PIRSF DUSP12 3 66 IPR016278 GO:0006470|GO:0008138
Spst1g03501 357 ProSiteProfiles Dual specificity protein phosphatase domain profile. 1 188 IPR020422 GO:0006470|GO:0008138
Spst1g03501 357 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 5 187 IPR029021 -
Spst1g03501 357 Gene3D Protein tyrosine phosphatase superfamily 4 206 IPR029021 -
Spst1g03501 357 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE 12 FAMILY MEMBER 1 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03501 Spst-Chr1 44022387 44025352 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03501 93 183 Protein tyrosine phosphatase (PTP) family AT3G06110 35.870 2.45e-14 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03501 K14819 - gmx:100776877 608.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03501 1 44022387 44025352 Spst1g03501 1 44022387 44025352 ECH