Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03485 ATGGGTAGCAGAAGTAGAACAGTTAACCTTAACACTAAGGACACCAACAAGGTTGTGAACGGGATGCCAAGCTACGCTCCTCCATTGCCTTCTTCTAGTTCCATGGGCATAGACGCAACTAATGTTCATCATCCTACCCGCATTTCTGAATTTGGAACCCTGGAGCAATCTCTTGGATTCCGTGTCGAGGATAGCATTAATCTTAGCAGAAATCCGGTGTTTAATCAAATGAAATCAAATAGCCAAGCTCTGGGTGCTGATATTCAATTTGGTGCTTTAAATAAGTCAATTGCAACATCGGATATAAACCTCTCTGCAGCTATTGCTGGGTCTCAGACATTGGCATTACAGAAAGACTCTCAAACAACTCTTGCTTCAACATCTGGTCATCGTGAGAATTGGGGAGAGACCAACATGGCTGATGCTAGTCCCAGGACTGATACTTCAACAGATGACACCGAAGACAAAAATCAACTGCCTGAAAGGGGTGAATCCAGTGATAGATCTAAAGATAAATCAGATCAAAAGACATTAAGACGGCTAGCTCAAAATCGCGAGGCTGCCAGGAAAAGCCGACTGAAGAAAAAGGTATATGTGCAACAATTAGAGAGCAGTAGGCTGAAACTGACCCAACTGGAGCAGGAGCTCCAGCGAGCTCGCCAGCAGGGAATATTTATATCAAGCACTGGAGATCAGGCCCAGTCAATGAGTGGAAATGGTGCTATGGCGTTTGATGTAGAATATGCACGATGGTTAGAAGAGCATAACCGGCAAACAAATGAGCTAAGGGCTGCAATAAATTCTCATGCTGGAGATATTGAACTTCGAACAATTGTTGATAATTTCATGGCACAATTTGACGATATCTTCAGGCTGAAAGGTATTGCAGCAAAAGCTGATGTTTTCCACATTCTGTCAGGAATGTGGAAGACTCCGGCTGAGAGGTGTTTCATGTGGATTGGAGGCTTTCGCTCGTCTGAACTCCTCAAGCTTCTTGTGAGTCAGTTGGAGCCTTTAACTGAGCAACAATTGATGGGCATATACAATTTGCAGCATTCATCCCAGCAGGCTGAAGATGCTCTTTCCCAAGGGATGGATGCATTGCAGCAATCACTGTCTGAGACATTGGCTAATGGTTCACCCAGCTCATCAGGCTCCTCGGGAAATGTGGCAAATTACATGGGGCAAATGGCTATGGCCATGGGAAAGCTTGGTACACTTGAGGGTTTTCTTCGCCAGGCTGACAATCTGAGGCAGCAAACACTACAACAAATGCTTCGGATATTAACGACGAGGCAATCAGCTCGTGCTCTTCTGGCAATTAGCGACTATTTCTCGCGGCTGCGAGCCCTGAGTTCTCTGTGGCTTGCCAGGCCAAGGGAGTGA 1386 0.4567 MGSRSRTVNLNTKDTNKVVNGMPSYAPPLPSSSSMGIDATNVHHPTRISEFGTLEQSLGFRVEDSINLSRNPVFNQMKSNSQALGADIQFGALNKSIATSDINLSAAIAGSQTLALQKDSQTTLASTSGHRENWGETNMADASPRTDTSTDDTEDKNQLPERGESSDRSKDKSDQKTLRRLAQNREAARKSRLKKKVYVQQLESSRLKLTQLEQELQRARQQGIFISSTGDQAQSMSGNGAMAFDVEYARWLEEHNRQTNELRAAINSHAGDIELRTIVDNFMAQFDDIFRLKGIAAKADVFHILSGMWKTPAERCFMWIGGFRSSELLKLLVSQLEPLTEQQLMGIYNLQHSSQQAEDALSQGMDALQQSLSETLANGSPSSSGSSGNVANYMGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMLRILTTRQSARALLAISDYFSRLRALSSLWLARPRE 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03485 461 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 179 194 IPR004827 GO:0003700|GO:0006355
Spst1g03485 461 Gene3D - 175 227 - -
Spst1g03485 461 SUPERFAMILY Leucine zipper domain 176 219 IPR046347 GO:0003700|GO:0006355
Spst1g03485 461 MobiDBLite consensus disorder prediction 1 19 - -
Spst1g03485 461 Coils Coil 195 222 - -
Spst1g03485 461 Pfam Seed dormancy control 259 334 IPR025422 GO:0006351|GO:0043565
Spst1g03485 461 PANTHER TRANSCRIPTION FACTOR TGA9 123 461 - -
Spst1g03485 461 FunFam BZIP family transcription factor 175 224 - -
Spst1g03485 461 MobiDBLite consensus disorder prediction 1 33 - -
Spst1g03485 461 ProSiteProfiles DOG1 domain profile. 241 458 IPR025422 GO:0006351|GO:0043565
Spst1g03485 461 MobiDBLite consensus disorder prediction 120 146 - -
Spst1g03485 461 MobiDBLite consensus disorder prediction 120 178 - -
Spst1g03485 461 SMART brlzneu 172 235 IPR004827 GO:0003700|GO:0006355
Spst1g03485 461 CDD bZIP_HBP1b-like 176 228 - -
Spst1g03485 461 MobiDBLite consensus disorder prediction 147 178 - -
Spst1g03485 461 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 174 218 IPR004827 GO:0003700|GO:0006355
Spst1g03485 461 Pfam Basic region leucine zipper 172 218 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03485 Spst-Chr1 43848096 43852664 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03485 139 461 bZIP Transcription Factor Family AT3G12250 74.622 2.53e-173 488
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Spst1g03485 DOG1 5e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03485 K14431 - gmx:778136 798.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03485 1 43848096 43852664 Spst1g03485 1 43848096 43852664 ECH