Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03476 ATGTCCCTTGAAGACTCTCTAAGATCTCTCTCCCTCGATTACCTCAACCTCCTCATCAACGGCCAGGCTTTCAGCGACGTCACTTTCAGCGTCGAGGGTCGCCTTGTCCACGCGCACCGCTGCATACTCGCCGCCAGAAGCCTCTTCTTCCGGAAATTCTTCTGCGGCCCGGACCCTCCCTCCGGCCTTGACCCCGCCGGCCCGCGGCTCAACTCGCGCTCCGGCATCATCCCAGTCAACTCCGTCGGCTACGAGGTCTTCCTTCTCATGCTCCAGTTCCTCTACAGTGGCCAAGTCTCCATCGTCCCTCAGAAGCATGAGGCCCGTCCCAATTGCGGCGAGCGAGGCTGCTGGCACACGCATTGCACCTCCGCCGTCGATCTCGCCCTCGACACCCTCGCCGCCGCCAGATACTTCGGCGTCGAACAGCTCGCATTGCTTACCCAGAAACAACTTGCGAGCATGGTGGAGAAGGCTTCCATAGAGGATGTAATGAAAGTGCTGTTGGCTTCGAGAAAGCAAGACATGCAGCAACTATGGGCCACTTGTTCTCACTTGGTAGCAAAATCAGGTCTTCCTCCCGAGGTTCTCGCCAAGCACCTCCCCATAGACATTGTGGCCAAAATCGAAGAGCTTCGCTACAAATCCTCGATCGCCCGCCGCTCCTTGGTGCCACACCATCCCCGCCATCACCCCCACCCCGACCACGCTGCCCTCGACCTCGAGGACCAGAAAATCCGGCGAATGAGGCGCGCGCTGGACTCCTCCGATGTGGAACTCGTGAAGCTCATGGTAATGGGGGAGGGTCTCAACCTCGACGAAGCACTGGCCTTACCCTACGCGGTGGAGAATTGCAGCAGAGAAGTGGTGAAGGCATTGCTGGAACTCGGTGCAGCCGACGTCAACTACCCCTCAGGCCCCGCCGGAAAGACGCCACTGCACATTGCCGCGGAGATGGTGTCCCCAGACATGGTGGCGGTCCTGCTGGACCACCACGCGGACCCGAATGTGAGAACCGTTGATGGGGTCACGCCTTTAGATATCCTCAGAACCCTAACCTCGGATTTCCTCTTTAAGGGTGCTGTCCCAGGATTGACCCACATCGAACCCAACAAACTGAGGCTGTGCTTGGAGCTTGTTCAATCAGCAGCTCTTGTCATGTCACGAGAAGAAGGCAATGCCAACAACAACAACGCTCCTAATTCCGCAGCACCCATTTACCCTCCCCCCATGAACGAGGACCACAACAGCAGTAGTAGCAGCGGCAACAACAACAACAACAACATCGGAAACCTCAACTTAGATTCAAGGTTGGTGTATCTGAACCTTGGTGCCACCGCTTCCATGAGTTCCCGGTTGGACGGTGGTGAGGACGAGAGAGAAGCCATGAACACAAACATGTATCATCACCACTCTCATGACTTCTAG 1428 0.57 MSLEDSLRSLSLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPAGPRLNSRSGIIPVNSVGYEVFLLMLQFLYSGQVSIVPQKHEARPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLASMVEKASIEDVMKVLLASRKQDMQQLWATCSHLVAKSGLPPEVLAKHLPIDIVAKIEELRYKSSIARRSLVPHHPRHHPHPDHAALDLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALPYAVENCSREVVKALLELGAADVNYPSGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVMSREEGNANNNNAPNSAAPIYPPPMNEDHNSSSSSGNNNNNNIGNLNLDSRLVYLNLGATASMSSRLDGGEDEREAMNTNMYHHHSHDF 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03476 475 ProSiteProfiles BTB domain profile. 25 103 IPR000210 GO:0005515
Spst1g03476 475 FunFam regulatory protein NPR5 isoform X1 4 189 - -
Spst1g03476 475 Gene3D - 240 356 IPR036770 -
Spst1g03476 475 MobiDBLite consensus disorder prediction 412 429 - -
Spst1g03476 475 SUPERFAMILY POZ domain 8 154 IPR011333 -
Spst1g03476 475 Pfam BTB/POZ domain 16 105 IPR000210 GO:0005515
Spst1g03476 475 ProSiteProfiles Ankyrin repeat profile. 308 340 IPR002110 GO:0005515
Spst1g03476 475 CDD BTB_POZ_NPR_plant 8 156 - -
Spst1g03476 475 PANTHER BTB/POZ DOMAIN AND ANKYRIN REPEAT-CONTAINING PROTEIN NH5.2 1 464 IPR044284 GO:0099402
Spst1g03476 475 Gene3D Potassium Channel Kv1.1; Chain A 4 189 IPR011333 -
Spst1g03476 475 ProSiteProfiles Ankyrin repeat region circular profile. 308 338 - -
Spst1g03476 475 Pfam Ankyrin repeats (3 copies) 256 338 IPR002110 GO:0005515
Spst1g03476 475 MobiDBLite consensus disorder prediction 392 429 - -
Spst1g03476 475 SMART ANK_2a 273 303 IPR002110 GO:0005515
Spst1g03476 475 SMART ANK_2a 308 337 IPR002110 GO:0005515
Spst1g03476 475 SMART BTB_4 25 156 IPR000210 GO:0005515
Spst1g03476 475 FunFam regulatory protein NPR5 isoform X2 239 356 - -
Spst1g03476 475 Pfam Domain of unknown function (DUF3420) 191 250 IPR024228 -
Spst1g03476 475 SUPERFAMILY Ankyrin repeat 267 351 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03476 Spst-Chr1 43655766 43658258 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Spst1g03476 Ank_2 5.6e-10 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03476 K14508 - gmx:100783294 795.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03476 1 43655766 43658258 Spst1g03476 1 43655766 43658258 ECH
Spst1g03476 1 43655766 43658258 Spst7g00375 7 2942745 2945922 PCT