Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03465 ATGGGGATGGCTGCAGAGTCACAGTTTCATGTGTTGGCTGTTGATGACAGCATCATAGATAGGAAACTCATTGAGAGACTCCTCAGAACCTCTTCCTACCAAGTTACTACAGTTGATTCTGGTAGCAAGGCTTTGGAGTTTCTGGGGTTGCGTGAGAATGATGAGAGCAACCCAAGTACACCATCTGTTTCTCCCAACAATCATCAGGAGGTGGAGGTGAATCTTGTTATTACAGATTACTGTATGCCTGGCATGACAGGGTATGACTTGCTTAAGAAAATCAAGGAATCTTCATCTTTGAGAAACATACCAGTGGTGATTATGTCATCTGAGAATGTGCCTTCAAGGATTAGCAGATGCCTGGAGGAAGGAGCAGAAGAATTTTTCTTGAAGCCTGTGAGGCAGGCAGATTTGAACAAGCTTAAACCCCACATGAAGAAGACCAAATTGAAAGATCAAAAGCAGGGAACAGCAGAAAAGCTTGAAAACTCAGAAGTTCTACAGAAACAGGCACAACAAATCATCCAAAATGACCACCAACAAGAACCAAAACCCCAAGATCCTCAGCCAGAGTCAGAGTCACATCCACAACCAATTATAGAACAACAGCAACAGTCACTACAACAAGCCAACAGTAACAAGAGGAAGACCATGGAACAGGGGCTTACACCTGAGACTGACAGAACAAGACCAAGATACAGTGGCATAGCCACTGTGGTATGA 723 0.4385 MGMAAESQFHVLAVDDSIIDRKLIERLLRTSSYQVTTVDSGSKALEFLGLRENDESNPSTPSVSPNNHQEVEVNLVITDYCMPGMTGYDLLKKIKESSSLRNIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRQADLNKLKPHMKKTKLKDQKQGTAEKLENSEVLQKQAQQIIQNDHQQEPKPQDPQPESESHPQPIIEQQQQSLQQANSNKRKTMEQGLTPETDRTRPRYSGIATVV 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03465 240 CDD REC_typeA_ARR 11 141 - -
Spst1g03465 240 ProSiteProfiles Response regulatory domain profile. 10 146 IPR001789 GO:0000160
Spst1g03465 240 MobiDBLite consensus disorder prediction 142 240 - -
Spst1g03465 240 MobiDBLite consensus disorder prediction 160 183 - -
Spst1g03465 240 MobiDBLite consensus disorder prediction 193 219 - -
Spst1g03465 240 PANTHER TWO-COMPONENT RESPONSE REGULATOR 9 202 IPR045279 GO:0009736
Spst1g03465 240 Coils Coil 200 220 - -
Spst1g03465 240 Gene3D - 10 230 - -
Spst1g03465 240 SUPERFAMILY CheY-like 8 140 IPR011006 -
Spst1g03465 240 Pfam Response regulator receiver domain 11 140 IPR001789 GO:0000160
Spst1g03465 240 SMART REC_2 9 142 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03465 Spst-Chr1 43509421 43510981 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03465 1 240 Response Regulator Gene Family AT3G57040 62.656 1.16e-100 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Spst1g03465 Response_reg 5.6e-20 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03465 K14492 - gmx:100814494 359.762
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03465 1 43509421 43510981 Spst1g03465 1 43509421 43510981 ECH