Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03462 ATGTCAGACTTTTGTTTTAGAGGTGAAAATGTTGGTGGGAATAGAGGTAGTGCTACTGGCACCAAGTGTGGGCGTTGGAATCCCACAACTGAACAGGTTAAGGTTCTGACTCAACTGTTCAGTTCTGGACTCCGCACCCCAAGCACTGATCAGATTCAAAAGATCTATAATCAGCTCAGTTTTTATGGTAAGATTGAAAGCAAAAATGTGTTCTATTGGTTTCAGAACCATAAGGCCAGGGAAAGACAAAAGCGTCGCAAGGTTGATAAGGATGTGAATCGTAGTGAAAACTCTATCTCCATCAATTCTTTCACACAAAATTTTACACAGCTATATCACGTTTCTGAGCCTAAGAGAGTGATTGAGACCCTTCAACTCTTCCCCTTGAAATCTTTTGGTGAATCAGAATCAAAGAACAAGAGGATTCATGGAAGTGACTGCGGGGATAATACCATGTTTTCATACACAGAGGAGGAACAAATGGATCATCCACCATTAGATCTTTGCTTGAGTTTTATGTGA 522 0.4061 MSDFCFRGENVGGNRGSATGTKCGRWNPTTEQVKVLTQLFSSGLRTPSTDQIQKIYNQLSFYGKIESKNVFYWFQNHKARERQKRRKVDKDVNRSENSISINSFTQNFTQLYHVSEPKRVIETLQLFPLKSFGESESKNKRIHGSDCGDNTMFSYTEEEQMDHPPLDLCLSFM 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03462 173 ProSiteProfiles 'Homeobox' domain profile. 19 84 IPR001356 GO:0003677
Spst1g03462 173 Pfam Homeodomain 23 83 IPR001356 GO:0003677
Spst1g03462 173 CDD homeodomain 25 85 IPR001356 GO:0003677
Spst1g03462 173 SMART HOX_1 21 88 IPR001356 GO:0003677
Spst1g03462 173 Gene3D - 22 89 - -
Spst1g03462 173 SUPERFAMILY Homeodomain-like 24 86 IPR009057 -
Spst1g03462 173 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 12 96 IPR044555 GO:0003700|GO:0099402
Spst1g03462 173 FunFam WUSCHEL-related homeobox 11 22 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03462 Spst-Chr1 43465406 43466043 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03462 4 173 Wox Gene Family AT3G11260 50.265 5.90e-56 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Spst1g03462 Homeodomain 6.1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03462 - - gmx:100791433 299.286