Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03455 ATGATTACGTCAAGGATATTGACTGGTGCATATATATATTCACAAGTCGAGATCATCACCCCCAACAAATCATCTTTAATCACCATGGTTGCATTGTTCTCTCCTCCTGTGTTATCGACCAAGGGGTGGCTCTTAGAGGAAGAGCCATTAGGGTATGATAATAACCAGAACTGCTTCTACAAAGATGATGTGTCCTCGGAGTACTCCTTTCCCTATCAGTTTTATTCACCACAGGCACATATTGAGGTTGAAATAGAAAGGTCCTCTGCACCATCCCCTGACCCTGTCATGGTCAAGAAACTTAGCCACAATGCTAGTGAACGTGATCGCCGCAAGAAGGTCAACAACTTGGTTTCTTCACTTCGGTCTCTTCTTCCAGTGGCAGATCAAACTAAAAAAATGAGCATTCCGGCAACTGTTTCTAAAGTCTTGAAATACATACCAGAGCTGCAACAGCAAGTGCAAGCACTAACAAGGAGAAAAGAGGAGCTTCTGGGCAGAATTTCTCAGCAATTGCAAGGCGATGCAGTGAACAAAGAATCTCAGAGGAACATTTCTCATCACAACTCTTCTTTTGTTGTCTCAACAAGTAGGCTCAACGATTGTGAAGCTGTAGTTCACATTTCCTCTCATGAGACTCACAAGGCTCCACTATCCGAGATCTTGCACTGTTTAGAAAATAATGGCCTTTTTTTGCTAGATGCTTCATCCTCAGAAACCTTTGGAGGAAGGGTTTTCTACAATTTGCATTTTCAGGTGGAAAAAACTCAGAGATTAGAGTCCCAGATTCTAACTGAGAAGCTTTTACCAATATATGAGAAGCAAAGCATTTTATAA 837 0.417 MITSRILTGAYIYSQVEIITPNKSSLITMVALFSPPVLSTKGWLLEEEPLGYDNNQNCFYKDDVSSEYSFPYQFYSPQAHIEVEIERSSAPSPDPVMVKKLSHNASERDRRKKVNNLVSSLRSLLPVADQTKKMSIPATVSKVLKYIPELQQQVQALTRRKEELLGRISQQLQGDAVNKESQRNISHHNSSFVVSTSRLNDCEAVVHISSHETHKAPLSEILHCLENNGLFLLDASSSETFGGRVFYNLHFQVEKTQRLESQILTEKLLPIYEKQSIL 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03455 278 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 98 150 IPR011598 GO:0046983
Spst1g03455 278 Coils Coil 147 167 - -
Spst1g03455 278 Pfam Helix-loop-helix DNA-binding domain 99 151 IPR011598 GO:0046983
Spst1g03455 278 FunFam Transcription factor ORG2 94 179 - -
Spst1g03455 278 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 99 170 IPR036638 GO:0046983
Spst1g03455 278 CDD bHLH_AtORG2_like 99 172 - -
Spst1g03455 278 Gene3D - 96 183 IPR036638 GO:0046983
Spst1g03455 278 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 96 267 - -
Spst1g03455 278 SMART finulus 104 156 IPR011598 GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03455 94 274 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56970 50.273 3.14e-54 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst1g03455 HLH 8.8e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03455 - - gmx:100803424 399.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03455 1 43398599 43400600 Spst1g03455 1 43398599 43400600 ECH