Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03424 ATGGCGGATGATAAAATTCGAATTGCTCTCTATGTTCAAAAGGCAGCATTACAGTTTATTGATGCTGGTAATCGATTTGAAAACAAGCTATCGAGTGAGGTAAGAGATTCTGGTTATGGTATTCAACCAGAGGATATTGCTTCTATTATTCGTGGCCATGATAACAGGACCTTAAATGATATTGGTGGAGTTGAAGCAATCGCAAGGAAACTGTCAGTTTCTTTGGAAGAAGGTATCAGCGAAGAGAGTATAAATAGAAGACAACAGATTTATGGATTCAATCGTTATACCGAAAAACCTTCTAGATCGTTCCTGATGTTTGTGTGGGATGCACTCCAGGACTTAACTTTGATCATGCTCATGGTTTGTGCTGTAGTTTCTATAGGTGTAGGTATAGCCACTGAAGGGTGGCCGAAGGGAACGTATGATGGTGTGGGTATTATAATCAGTATATTCTTGGTAGTCACTGTTACAGCTGTCAGTGATTACAAGCAATCCCTACAATTCAGGGATTTGGACAAAGAGAAGAAAAAGATATTTATTCAGGTGACCAGGGATGGAAAAAGGCAGAAGATCTCAATTTATGATATAGTAGTTGGTGATGTTGTTCATTTGTCAACTGGGGATCAAGTTCCGGCTGATGGAATTTTTATATCAGGATACTTTTTGCTTATTGATGAATCTAGTTTGTCAGGTGAGAGCGAACCAGTAAATGTTAATGAAGAAAAACCGTTTCTTCTCTCAGGAACCAAAGTGCAGGATGGTCAGGGGAAGATGTTAATTACAACTGTTGGGATGAGGACTGAATGGGGAAAATTGATGGAAACTATTAACGAGGGAGGAGAGGATGAGACCCCGTTGCAGGTTAAATTAAATGGAGTTGCTACTGTTATTGGTAAAATTGGTTTGATATTTGCTATTCTGACATTTGTGGTGCTGACAATAAGGTTTCTGGTTGAAAAAGCACTTAATGGTGAGTTTTCCAGCTGGTCTACGGATGATGCAATGAAATTACTGGACTTCTTTGCTATTGCTGTGACCATACTAGTTGTTGCTGTTCCTGAAGGATTGCCACTGGCTGTGACACTGAGTCTTGCTTTTGCAATGAAAAAATTAATGAATGACAAGGCACTTGTAAGGCATCTTTCTGCTTGTGAGACTATGGGTTCAGCTAGTTGCATTTGCACAGATAAGACAGGGACATTGACCACTAACCGGATGGTGGTTACTAAAACATGGATATGCGAAAAATCCATGCAGATAAAAGGTAAAGAGAGTGCTGACGAACTGAAAACATCTACACCTGAAGGAGTTCAAAACATCCTTTTGCAGGCTATATTTCAAAATACTTCTGCTGAAGTAGTTAAGGATAAAGATGGAAAGGAAACAATATTGGGGACCCCAACAGAATCAGCACTGTTGGAATTTGGTTGCCTTTTGGGTGCTGATTTTGATGCCTATGCCCAGCGTAGAGAGTATAAGATACTGAAAGTTGAGCCATTCAATTCAGTGCGAAAGAAAATGTCCGTGCTTGTGGGTCTTCCTGGTGGAGGGGTCAGAGCATTCTGCAAAGGTGCATCAGAAATAATATTAAAAATGTGTGACAAAATTATTAATTGCAATGGAGAAGTTGTTGATCTTCCCGAAGACCGGGCAAATAATGTCTTTGGTGTTATAAATGATTTTGCCTCTGAAGCTTTGAGAACTCTTTGTTTGGCCTTCAAAGATATAAATGAAACCCATGGGGACGCCAACATTCCTGGTTGTGGCTATACTCTAATAGCATTGGTAGGAATCAAGGATCCTGTACGCCCGGGGGTTAAGGAAGCTGTTCAAATTTGCATAGCTGCTGGAATAACTGTCCGCATGGTAACCGGTGATAACATACATACAGCAGAAGCAATAGCCAAAGAATGCGGTATACTTACTGAGGGTGGTGTAGCCATAGAAGGTCCAAAGTTTCGGGACCTATCTTCTGAGGAAACGAAGGATGTCATACCTAGAATCCAGGTGATGGCACGATCCTTACCACTCGACAAGCATAAGTTAGTAAACAATTTGAGGAGTATGTTTGGTGAGGTTGTTGCTGTTACTGGTGATGGAACCAATGATGCTCCAGCACTGCGTGAGGCAGACATTGGACTTGCAATGGGCATAGCAGGAACTGAGGTTGCCAAAGAAAGTGCTGATGTCATTATCATGGATGATAACTTCACGACTATTGTCGATGTTGTGAAATGGGGACGTTCAGTATACATAAACATTCAAAAATTTGTGCAGTTTCAATTGACAGTTAACGTTGTTGCTCTGGTTATCAACTTCTTTTCTGCATGCATCACAGGATCTGCTCCACTCACAACTGTTCAATTGCTTTGGGTCAACTTGATTATGGACACTCTTGGTGCATTAGCCCTAGCTACTGAACCTCCTAATGATGGACTTTTGAAAAGACCCCCTGTTGCAAGGGGAGCAAACTTCATCACCAAACCTATGTGGAGGAATATCATTGGTCAAAGTATATACCAATTAATTATCCTTGCGATTCTAAATTTTGATGGGAAGAGGCTCCTCGGAATTAGTGGTTCGGATGCAACAGAAGTGCTCAACACTTTTATATTCAATTCCTTTGTATTTTGCCAGGTGTTTAATGAGATAAACAGCAGAGATATTGAAAAGATAAACATATTCAGAGGCATGTTCGACAGCTGGATATTTTTGTTGATAATTTTCTCCACTGCGGCATTTCAAGTGGTGATAGTTGAATTTCTTGGAATTTTTGCCGGCACTGTGCCTCTAAACTGGCAATTCTGGTTACTAAGTGTGTTAATCGGAGCAGTTAGCATGCCTATAGCTGCTATCCTCAAGTGCATCCCAGTTGAAAGAGATATTAGTAAGCAGCACCATGATGGTTATGAGGCACTGCCATCTGGTCCCGACCTGGCATGA 2946 0.409 MADDKIRIALYVQKAALQFIDAGNRFENKLSSEVRDSGYGIQPEDIASIIRGHDNRTLNDIGGVEAIARKLSVSLEEGISEESINRRQQIYGFNRYTEKPSRSFLMFVWDALQDLTLIMLMVCAVVSIGVGIATEGWPKGTYDGVGIIISIFLVVTVTAVSDYKQSLQFRDLDKEKKKIFIQVTRDGKRQKISIYDIVVGDVVHLSTGDQVPADGIFISGYFLLIDESSLSGESEPVNVNEEKPFLLSGTKVQDGQGKMLITTVGMRTEWGKLMETINEGGEDETPLQVKLNGVATVIGKIGLIFAILTFVVLTIRFLVEKALNGEFSSWSTDDAMKLLDFFAIAVTILVVAVPEGLPLAVTLSLAFAMKKLMNDKALVRHLSACETMGSASCICTDKTGTLTTNRMVVTKTWICEKSMQIKGKESADELKTSTPEGVQNILLQAIFQNTSAEVVKDKDGKETILGTPTESALLEFGCLLGADFDAYAQRREYKILKVEPFNSVRKKMSVLVGLPGGGVRAFCKGASEIILKMCDKIINCNGEVVDLPEDRANNVFGVINDFASEALRTLCLAFKDINETHGDANIPGCGYTLIALVGIKDPVRPGVKEAVQICIAAGITVRMVTGDNIHTAEAIAKECGILTEGGVAIEGPKFRDLSSEETKDVIPRIQVMARSLPLDKHKLVNNLRSMFGEVVAVTGDGTNDAPALREADIGLAMGIAGTEVAKESADVIIMDDNFTTIVDVVKWGRSVYINIQKFVQFQLTVNVVALVINFFSACITGSAPLTTVQLLWVNLIMDTLGALALATEPPNDGLLKRPPVARGANFITKPMWRNIIGQSIYQLIILAILNFDGKRLLGISGSDATEVLNTFIFNSFVFCQVFNEINSRDIEKINIFRGMFDSWIFLLIIFSTAAFQVVIVEFLGIFAGTVPLNWQFWLLSVLIGAVSMPIAAILKCIPVERDISKQHHDGYEALPSGPDLA 981
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03424 981 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 401 607 IPR023299 GO:0000166
Spst1g03424 981 Pfam Cation transporting ATPase, C-terminus 783 956 IPR006068 -
Spst1g03424 981 NCBIfam calcium-translocating P-type ATPase, PMCA-type 55 960 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Spst1g03424 981 PRINTS P-type cation-transporting ATPase superfamily signature 698 717 - -
Spst1g03424 981 PRINTS P-type cation-transporting ATPase superfamily signature 226 240 - -
Spst1g03424 981 PRINTS P-type cation-transporting ATPase superfamily signature 617 627 - -
Spst1g03424 981 PRINTS P-type cation-transporting ATPase superfamily signature 722 734 - -
Spst1g03424 981 PRINTS P-type cation-transporting ATPase superfamily signature 395 409 - -
Spst1g03424 981 PRINTS P-type cation-transporting ATPase superfamily signature 595 606 - -
Spst1g03424 981 FunFam Calcium-transporting ATPase 405 602 - -
Spst1g03424 981 SMART Cation_ATPase_N_a_2 60 132 IPR004014 -
Spst1g03424 981 PANTHER CATION TRANSPORTING ATPASE 38 959 - -
Spst1g03424 981 FunFam Calcium-transporting ATPase 715 961 - -
Spst1g03424 981 PRINTS H+-transporting ATPase (proton pump) signature 555 573 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Spst1g03424 981 PRINTS H+-transporting ATPase (proton pump) signature 730 755 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Spst1g03424 981 PRINTS H+-transporting ATPase (proton pump) signature 698 714 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Spst1g03424 981 ProSitePatterns E1-E2 ATPases phosphorylation site. 397 403 IPR018303 -
Spst1g03424 981 CDD P-type_ATPase_Ca_PMCA-like 84 831 - -
Spst1g03424 981 SUPERFAMILY Calcium ATPase, transduction domain A 180 276 IPR008250 -
Spst1g03424 981 Gene3D - 78 278 - -
Spst1g03424 981 Gene3D - 405 602 IPR023299 GO:0000166
Spst1g03424 981 FunFam Calcium-transporting ATPase 595 743 - -
Spst1g03424 981 FunFam Calcium-transporting ATPase 156 278 - -
Spst1g03424 981 NCBIfam HAD-IC family P-type ATPase 660 781 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Spst1g03424 981 NCBIfam HAD-IC family P-type ATPase 494 643 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Spst1g03424 981 NCBIfam HAD-IC family P-type ATPase 147 418 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Spst1g03424 981 Pfam E1-E2 ATPase 181 373 - -
Spst1g03424 981 SUPERFAMILY HAD-like 394 803 IPR036412 -
Spst1g03424 981 Pfam Cation transport ATPase (P-type) 449 537 - -
Spst1g03424 981 Gene3D - 110 957 - -
Spst1g03424 981 Gene3D - 392 743 IPR023214 -
Spst1g03424 981 SFLD p-type atpase 377 750 IPR044492 -
Spst1g03424 981 Pfam Cation transporter/ATPase, N-terminus 62 127 IPR004014 -
Spst1g03424 981 SFLD C1.7: P-type atpase like 377 750 - -
Spst1g03424 981 SUPERFAMILY Calcium ATPase, transmembrane domain M 62 959 IPR023298 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03424 Spst-Chr1 42878567 42883249 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03424 3 978 Primary Pumps ATPases AT3G57330 72.774 0.0 1464
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03424 K01537 - gmx:100783489 1743.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03424 1 42878567 42883249 Spst1g03424 1 42878567 42883249 ECH
Spst1g03424 1 42878567 42883249 Spst7g00347 7 2737293 2746021 PCT