Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03409 ATGGCTATGGTGTGGGAAGATCTTACAGTTGAGGTGCAGAAGAAGAAGAAGAAGGTGGTGCTTAATGGAATCACTGGTTTTGCTAAACCTGCTAGGGTTTTGGCTGTCATGGGTCCTTCTGGCTGCGGCAAAACCACCTTCCTTGACTCTTTCACTGGAAAACTTGCTCCAAACCTTGTAATGACAGGGAACATTCTAATCAATGGGAAGAAAAAAAGCTTGAATTCCAGAGAAGTGTCTTATGTGGCTCAAGAGGACCTTTTCTTGGGAACTTTGACTGTCAAAGAGACCATCGCATTCTCTGCAAACATGAGGCTTCCTTCCAAAATGACCAAAGAAGAAATAAACCAAGTGGTGGAAGAAACCATAATGGAAATGGGTCTGGAAGATTGTGCAGATACAAGGATTGGGAATTGGCATTGTAAGGGTATTAGTACCGGTGAAAAGAAGAGACTTAGCATTGGCCTTGAGATTTTGACACAACCCCATATCTTACTTCTTGATGAACCTACTACTGGACTTGATAGTGCCTCAGCTTTCTTTGTGATTCAAGCTCTATGCAACATTGCTCAGAATGGGAAAATAGTTGTCTGCTCCATTCACCAACCCAGTGGTGACATTTTTTATCTATTTGATGATTTGCTTTTGCTCTCAGGTGGGGAAACTGTTTATTTTGGAAAATCGAAGAAGGCTCTAAAGTTTTTTGCTGATGCAGGGTTATCCTGTCCTACTAGAAGAAATCCTCCAGATCATTTCCTTCTATGCATCAATCTGGACTTTGACTTGATTGCTTCAGCTCTAGTAACAACCCAGCCATCTTCATCAAATTCAGCACTGGGAATGAAAAAAGCAGAGATAAGAGAGATACTCATTCAGAGTTATAAAAGCTCAGTGCTACCTGTCAATAGAAGAAAAATCCAACAACTGAAATCTAATGAAGAGAAAGAAATTAAGACAAATATAGGAGGTAGCAGCACCACATGGTGGAAGCAATTGTGCACATTGACTGTGCGAACTTTCCTGAACATGAGAAGGGACATTGGTTACTACTGGCTAAGGATAATATTCTACATGCTGGTAGCAATCACTGTTGGCACCCTCTTTTTTAATATTGGCACGGGGAAAGACTCAATTATGGTTAGAGGAAAGTGTACATCATTTATCTATGGGTTCATGGTCTGTTTGTCATGTGGAGGATTACCATTTTTCATTGAAGAATTGAAGGTGTTCTATGGTGAAAGATCCAAAGGGCATTATGGAGAGGCTGCATTTGTAGTATCAAACATGATATCATCATTCCCTTTCCTTGTTCTAATATCACTCTCCTCTGGAACAATCATTTACTTCATGGTGCAATTTCATCCGGGATTAATTAATTATGCATTTTTATGTGTCGACTTATTCTTCTCCCTATCTATTGTTGAGTGCTGCATCATGATTGTATCCTCAGTGGTCCCCAATGTGCTGATGGGCTTAGGAACAGGAACTGGTGTAATTATCCTCATGATGATGCCCTCCCAAATTTCAAGACGATTACCTGACATTCCAAAGATCTTCTGGCGCTATCCCATGTCCTACCTCAGTTTTGCTCATTGGGCAGTGCAGGGACAGTACAAGAATGACATGCTGGGGTTGGAATTTGATCCTTTGGTGCCAGGAAACCCCAGAGTTAGTGGAGAACAAGTCCTGGAATCGATACTTGGGGTTCCATTGGATCATAGCAAATGGTGGGACTTAACAGCATTGGCTGTCTTATTAGTAGCTCACAGATTGGTTCTTTACCTGGTGCTTCGCTATGTCACAAGATCTAATTCACCTAAGCTGTGGTTTTATGCCAAGAAAACTCTACGCTCTGCTCAAAAATGTTTCTTCAAGAAGAAGCCATCTACTTTCTCCAGGAGAGAAGCTCATGCTCCATTATCATGCCAAGAGGGTCTTATGTTACTGGATCAGCATCTCAAGGAGACCAACTCCTGCATTGAAACTTCACGTGATGAAGGAATAGTTGAACAAAACTTTGTGGAGCAAGTGTAA 2034 0.4135 MAMVWEDLTVEVQKKKKKVVLNGITGFAKPARVLAVMGPSGCGKTTFLDSFTGKLAPNLVMTGNILINGKKKSLNSREVSYVAQEDLFLGTLTVKETIAFSANMRLPSKMTKEEINQVVEETIMEMGLEDCADTRIGNWHCKGISTGEKKRLSIGLEILTQPHILLLDEPTTGLDSASAFFVIQALCNIAQNGKIVVCSIHQPSGDIFYLFDDLLLLSGGETVYFGKSKKALKFFADAGLSCPTRRNPPDHFLLCINLDFDLIASALVTTQPSSSNSALGMKKAEIREILIQSYKSSVLPVNRRKIQQLKSNEEKEIKTNIGGSSTTWWKQLCTLTVRTFLNMRRDIGYYWLRIIFYMLVAITVGTLFFNIGTGKDSIMVRGKCTSFIYGFMVCLSCGGLPFFIEELKVFYGERSKGHYGEAAFVVSNMISSFPFLVLISLSSGTIIYFMVQFHPGLINYAFLCVDLFFSLSIVECCIMIVSSVVPNVLMGLGTGTGVIILMMMPSQISRRLPDIPKIFWRYPMSYLSFAHWAVQGQYKNDMLGLEFDPLVPGNPRVSGEQVLESILGVPLDHSKWWDLTALAVLLVAHRLVLYLVLRYVTRSNSPKLWFYAKKTLRSAQKCFFKKKPSTFSRREAHAPLSCQEGLMLLDQHLKETNSCIETSRDEGIVEQNFVEQV 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03409 677 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 3 620 - -
Spst1g03409 677 Pfam ABC-2 type transporter 331 536 IPR013525 GO:0016020|GO:0140359
Spst1g03409 677 Gene3D - 2 239 IPR027417 -
Spst1g03409 677 SMART AAA_5 30 221 IPR003593 GO:0016887
Spst1g03409 677 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 3 244 IPR003439 GO:0005524
Spst1g03409 677 Pfam ABC-2 type transporter 201 254 IPR043926 GO:0140359
Spst1g03409 677 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 235 IPR027417 -
Spst1g03409 677 Pfam ABC transporter 25 171 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03409 Spst-Chr1 42765969 42772648 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03409 28 204 Calmodulin-binding Proteins AT2G36910 28.022 5.37e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03409 - K05681 gmx:100802207 994.956