Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03408 ATGGAGCTGCATGCTAATGCAGGTATTGAAGTGGAGAAGGAGAGGAGAGTGTGTCTGGTTTGGGAAGATTTGACAGTGGTGACATCAAATGGTAGCAGTGGTTCAGAAAAGGAACTGTTGAAAGGGATAACTGGTTATGCAGAACCCAACCGGATCATGGCACTCATTGGTCCTTCAGGATCTGGGAAATCAACTTTACTTGCTGCACTTGCTGGGATACTTCCCACCAATGTTAGGATGACCGGAAATGTACTGCTCAACGGGACTACCAGAAGAAAGACAGGCTGCAGAGATGTTTCTTATGTTACTCAAGAAGATTATTTCTTGGGAACTCTAACAGTGAGGGAAACCCTCACATATGCAGCTCGTTTGAGACTTCCTGCTGATATGACCAGAAATGAGATTGACAAGGTGGTGAGCAATGTATTGGCTGAAATGGGTCTGGAAGATACTGCAGAAAGCAGACTTGGGAATTGGCATTTGAGAGGCATAAGTAGCGGAGAGAAAAGAAGGCTTAGCATAGGCATTGAGATCTTAACTCAACCTCATGTAATGTTTCTGGATGAACCCACCAGTGGCTTGGATAGTGCAGCCTCTTTCTATGTTATTTCTTCTCTGTCAAACATAGCTCATGATGGAAGAATAGTTATATGCTCCATTCACCAGCCAAGCAGTGAAGTCTTCAACCTTTTTGATGATCTGGTCCTCCTTGCAGGAGGTGAAGCTGTATACTTTGGGGAAGCAACTATGGCTTTAAAGTGCTTTGCTGATGCAGGGTTCCCTTGTCCAATCCGAAAGAATCCACCTGATCATTTCCTTCGTTGTGTTACCCCAGAGTTCGATAATGTTACAGCCTTAATACAGTCCAAAATTGTTAATGAGGCCTCATCGTCATCGTGGAATTCTCAAATGAATATGACAACAGAGGAGATTAAATCGGAACTCATAATGAACTACAAGAACTCCATACATTCAGCAAATGCAAGGAGAAAAATTGGAGATATGATAAAATGTTTGCAGGAAGAACCTTTAGTAGGGAAGATATATGATACTTGCTGGCTGAAGCAGCTATGGACATTGACAAATAGATCATTCCTAAATATGACCAGAGACATTGGTTACTATTGGCTAAGAATTGTATTCTATATCATTATGTCAGTGAGTGCTGGTTGTCTTCTTTTCAACATAGGAACAAGTAATGAAGCACTCATATCTAGAGGAAAATGTGATGGATTCATCTTTGGGTTAATGATCTTTCTGTGTTTAGGGGGCGTACCCTTTTACCATGAGGAATTAATGGTCTTCAAAAGTGAGAGGTTTGGAAAGCACTATGGAGAGGCCATCTTTGTACTGTCACATTTCCTCTCATCATTGCCGTTTGTTCTTGCAATTTCCCTCTCTTCAGGAACAATACTTTACCATATGGTGAACTTTCATCCAGGCTTCTCTCACTACTGCTATTTTTGCATGAATATATTTTGCTTCATTTCTGTCACAGAAGGCTGCACGTTATTCGTTGCAGCACTTGCACCTGACCTATTGGTAGCAATTGGAACTGCCACTGGTGTAATTGTATTCATGATGGTGCCATCTAATGTATTTAGAAGTCTAGCAGACCTTCCAAAATTCTTTTGGCGCTATCCAATGTCCTATCTCAGCTACATTACATGGTCAATACAGGGACAGTTCAAGAATGACCTGATTGGTCTTGAATTTGAACCACAGGTGGCTGGGGATACCAAGATAAAGGGTGAACATATACTTCACGTTATGTTTGGAATTAGGACTGATTATTCAAAATGGTGGGACTTAGGAGTTTTAGTTTGCTTCTTGATATGTTATAGAGTTCTGTATTACTTGGCCCTTAAACACAAGGAGAGAGCTTCATTGTTATTACACACCACAAGGATTCTCCGGCACATTTTTCTCAAAAGACCCACTTTGAGGGACAAATATATTTCTTCCAAGCATCAATCCTTGCATCCTTTGTCAGTTCAGGAGGGTCTTTACTCTCCAATGTCATAA 2025 0.4114 MELHANAGIEVEKERRVCLVWEDLTVVTSNGSSGSEKELLKGITGYAEPNRIMALIGPSGSGKSTLLAALAGILPTNVRMTGNVLLNGTTRRKTGCRDVSYVTQEDYFLGTLTVRETLTYAARLRLPADMTRNEIDKVVSNVLAEMGLEDTAESRLGNWHLRGISSGEKRRLSIGIEILTQPHVMFLDEPTSGLDSAASFYVISSLSNIAHDGRIVICSIHQPSSEVFNLFDDLVLLAGGEAVYFGEATMALKCFADAGFPCPIRKNPPDHFLRCVTPEFDNVTALIQSKIVNEASSSSWNSQMNMTTEEIKSELIMNYKNSIHSANARRKIGDMIKCLQEEPLVGKIYDTCWLKQLWTLTNRSFLNMTRDIGYYWLRIVFYIIMSVSAGCLLFNIGTSNEALISRGKCDGFIFGLMIFLCLGGVPFYHEELMVFKSERFGKHYGEAIFVLSHFLSSLPFVLAISLSSGTILYHMVNFHPGFSHYCYFCMNIFCFISVTEGCTLFVAALAPDLLVAIGTATGVIVFMMVPSNVFRSLADLPKFFWRYPMSYLSYITWSIQGQFKNDLIGLEFEPQVAGDTKIKGEHILHVMFGIRTDYSKWWDLGVLVCFLICYRVLYYLALKHKERASLLLHTTRILRHIFLKRPTLRDKYISSKHQSLHPLSVQEGLYSPMS 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03408 674 Pfam ABC-2 type transporter 356 561 IPR013525 GO:0016020|GO:0140359
Spst1g03408 674 ProSitePatterns ABC transporters family signature. 164 178 IPR017871 GO:0005524|GO:0016887
Spst1g03408 674 CDD ABCG_EPDR 16 246 - -
Spst1g03408 674 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 12 634 - -
Spst1g03408 674 SMART AAA_5 49 249 IPR003593 GO:0016887
Spst1g03408 674 Pfam ABC-2 type transporter 221 277 IPR043926 GO:0140359
Spst1g03408 674 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 19 250 IPR027417 -
Spst1g03408 674 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 19 264 IPR003439 GO:0005524
Spst1g03408 674 Pfam ABC transporter 40 192 IPR003439 GO:0005524
Spst1g03408 674 Gene3D - 8 257 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03408 Spst-Chr1 42742204 42748173 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03408 38 233 Calmodulin-binding Proteins AT2G36910 25.243 1.57e-09 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03408 - K05681 aip:107646291 922.924