Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03407 ATGGAAGGAACAAGTGATAGGGGGTTGTTGGAATGTGGAAGGAAATGCACTCCACCACCGTTTTTGTTGAAGACTTACATGCTCGTGGAGGATCCGGCCACCGACGAGGTCGTGTCGTGGAATGCCGACGGGACGGCGTTCGTGGTGTGGCAGCCGGCGGAGTTTGCTCGTGATCTCCTCCCAACACTCTTCAAGCACAGCAACTTCTCTAGCTTTGTACGCCAGCTCAATACTTACGGATTTCGTAAAGTTGCAACAAACAGATGGGAGTTTTTCAATGACAGGTTCAAGAAAGGTGAAAGAGAACAGCTATATGAGATTCGGCGAAGAAAAGCTTGGAGCAGCAAGCAACAAGCTAATGCACCAAACCAAGGCACACCTCAAGATTCTGATGAAGATCAAAGGTCCTCATCAACCTCATCATCTTCTGGCTACACTACTCTTGTGGATGAAAACAAGAGGCTGAAGAAGGAGAATGGGGTGTTGAACTCTGAGCTCACAAGCATGAAGAGGAAGTGTAAGGAACTGCTTGGTTTGGTGGCCAAATATTCATCACAGGCTGAAGAGAAGGATGAAGATGAAAGGCCAATGCTGTTTGGAGTTAGATTAGATGTTGAAGGAGGGAGGGAGATGAAGAGGAATAGAGCTGAGATAACTGAAAGCGCAAGCATTATGCTGTCTCAGTCATGCAAATAG 696 0.4713 MEGTSDRGLLECGRKCTPPPFLLKTYMLVEDPATDEVVSWNADGTAFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATNRWEFFNDRFKKGEREQLYEIRRRKAWSSKQQANAPNQGTPQDSDEDQRSSSTSSSSGYTTLVDENKRLKKENGVLNSELTSMKRKCKELLGLVAKYSSQAEEKDEDERPMLFGVRLDVEGGREMKRNRAEITESASIMLSQSCK 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03407 231 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 17 179 IPR027725 -
Spst1g03407 231 MobiDBLite consensus disorder prediction 114 149 - -
Spst1g03407 231 SUPERFAMILY "Winged helix" DNA-binding domain 17 110 IPR036390 -
Spst1g03407 231 PRINTS Heat shock factor (HSF) domain signature 21 44 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst1g03407 231 PRINTS Heat shock factor (HSF) domain signature 59 71 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst1g03407 231 PRINTS Heat shock factor (HSF) domain signature 72 84 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst1g03407 231 FunFam Heat stress transcription factor B-4 13 111 - -
Spst1g03407 231 Pfam HSF-type DNA-binding 21 110 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst1g03407 231 Coils Coil 152 172 - -
Spst1g03407 231 SMART hsfneu3 17 110 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst1g03407 231 ProSitePatterns HSF-type DNA-binding domain signature. 60 84 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst1g03407 231 MobiDBLite consensus disorder prediction 113 150 - -
Spst1g03407 231 Gene3D - 13 111 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03407 Spst-Chr1 42733099 42735148 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03407 18 204 HSF AT2G41690 55.556 4.10e-69 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Spst1g03407 HSF_DNA-bind 7.6e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03407 K09419 - gmx:100786140 397.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03407 1 42733099 42735148 Spst1g03407 1 42733099 42735148 ECH
Spst1g03407 1 42733099 42735148 Spst7g00336 7 2648586 2650736 PCT