Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03406 ATGGCTCAGAACGTGGTTCTCTTGATCCACTTTTTCACCGGATTGATACTAATGGTTATCTCATTCATTATGGGACTCATGACATCAACAATAAGTACAAATTCTTTTCTTAAGAATTTTTTCAGAATATCTCCTGGATTTTGTTTTGCTGATGGTCTTGCTTCATTAGCTCTTTTGCGGCAAGGAATGAAAGATAAAACAAGTCATGGGGTGTTTGATTGGAATGTTACTGGGGCTTCCATCTGTTATCTTGCTGTTGAGAGCGTTAGTTACTTTCTGTTGACTCTTGCACTTGAAATTTTTCCTTCTATCAAATTGACTTCATTCATGATCAAAAAGTGGTGGGAAAAAATTAATATCTTCCGGCATGACAGTCCTTATTTGGAACCTCTGCTAGAACCTTCCTCTGAAATTGTTGTTACTGAGATAGATGAAGATGTAGATGTAAAAACAGAAAGAAATAGAGTACTTTCAGGTTCCCTTGACAATTCCATTATCTACCTGCGCAATCTTCGTAAGGTATATTTTGAGGAGAAGCATCATGGGAGAAAGGTTGCAGTAGATTCTTTAACTTTCTCGGTCCAGGAAGGAGAATGTTTTGGCTTTTTAGGAACAAATGGAGCTGGAAAGACCACAACTCTTTCTATGCTATGCGGTGAAGAATCTCCTTCTGGTGGGACTGCTTTTATTTTTGGCAAAGATATATGTTCCCATCCAAAGGCTGCTCGTCAATATATTGGATATTGTCCACAATTTGATGCCCTATTGGAATACTTAACTGTTCAAGAGCATCTTGAGCTTTATGCTAGAATAAAAGGTGTTCCAGATTTTGCACTAGAAAATGTCGTTATGGAAAAGTTGACTGAGTTTGACTTGTTGAAACATGCTAATAAACCATCATTTTCGCTTAGTGGTGGGAATAAAAGAAAACTGTCTGTTGCAATTGCAATGATAGGTGATCCACCTATAGTCATTCTTGATGAACCATCCACAGGTATGGATCCGATTGCCAAAAGGTTCATGTGGGATGTAATATCTAGGATCTCAACAAGACGAGGAAAGACTGCAGTTATTTTGACTACACATAGCATGAATGAAGCCCAAGCATTATGTACCAGAATAGGGATAATGGTTGGTGGACGATTACGATGCATCGGAAGTCCACAGCACCTAAAAACAAGATTTGGGAATCATCTTGAGCTAGAGGTCAAACCTACCGAAGTTAGTTCCGTGGACTTGCAAACACTCTGCCAAGCTATTCAAGAAAGACTTCTTGATGTCCCGTCACATCCTAGAAGCTTACTTAATGACCTTGAGATTTGCATTGGGGGAACTGACTCTGTCACATCAGGAAATACCTCCATTGCAGAGATTAGCCTGACTCGAGAAATGATAGGCTTAATTGGGCGCTGGCTTGGCAATGAAGAAAGAGTAAAGACACTAATCTCTTGCACACCTGTCTGTGATGGAGTTTCCCAGGAACAATTATCAGAACAACTGTTTCGAGGTGGTGGTATTCCATTGCCTGTATTTTCTGAGTGGTGGCTATCTAAACAAAAATTCTCCGAAATTGATTCATTTATTCTCTCTTCATTTGGGGGAGCACGATGCCAAGGGTGCAATGGTTTGAGCATCAGATATCAGTTGCCATATAATGAGGATTTTTCCTTGGCAGATGTTTTTGGACTTCTTGAAAGAAATAGGAATACATTAGGAATTGCGGAGTACAGCATCAGTCAATCAACTCTGGAGACAATATTTAATCATTTTGCAGCAAATGCATGA 1785 0.3938 MAQNVVLLIHFFTGLILMVISFIMGLMTSTISTNSFLKNFFRISPGFCFADGLASLALLRQGMKDKTSHGVFDWNVTGASICYLAVESVSYFLLTLALEIFPSIKLTSFMIKKWWEKINIFRHDSPYLEPLLEPSSEIVVTEIDEDVDVKTERNRVLSGSLDNSIIYLRNLRKVYFEEKHHGRKVAVDSLTFSVQEGECFGFLGTNGAGKTTTLSMLCGEESPSGGTAFIFGKDICSHPKAARQYIGYCPQFDALLEYLTVQEHLELYARIKGVPDFALENVVMEKLTEFDLLKHANKPSFSLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWDVISRISTRRGKTAVILTTHSMNEAQALCTRIGIMVGGRLRCIGSPQHLKTRFGNHLELEVKPTEVSSVDLQTLCQAIQERLLDVPSHPRSLLNDLEICIGGTDSVTSGNTSIAEISLTREMIGLIGRWLGNEERVKTLISCTPVCDGVSQEQLSEQLFRGGGIPLPVFSEWWLSKQKFSEIDSFILSSFGGARCQGCNGLSIRYQLPYNEDFSLADVFGLLERNRNTLGIAEYSISQSTLETIFNHFAANA 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03406 594 Gene3D - 158 408 IPR027417 -
Spst1g03406 594 Pfam ABC transporter 188 330 IPR003439 GO:0005524
Spst1g03406 594 ProSitePatterns ABC transporters family signature. 303 317 IPR017871 GO:0005524|GO:0016887
Spst1g03406 594 CDD ABC_subfamily_A 166 392 - -
Spst1g03406 594 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 146 591 IPR026082 GO:0016020|GO:0055085|GO:0140359
Spst1g03406 594 SMART AAA_5 196 383 IPR003593 GO:0016887
Spst1g03406 594 FunFam ABC transporter A family member 1 155 409 - -
Spst1g03406 594 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 165 395 IPR027417 -
Spst1g03406 594 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 166 404 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03406 Spst-Chr1 42717987 42730440 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03406 190 391 Calmodulin-binding Proteins AT2G36910 24.038 1.50e-10 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03406 K05643 - gmx:100803263 1115.91