Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03405 ATGGGGGCTGCGTGGAGGCAGTTGAAGGTCATGCTCCGCAAGAACTGCCTCCTCAAGATTCGTCATCCCTTCGTCACTGCCGCCGAGGGAGAGTATTTAGCTTTTGCACCAGATACTGATGAGACGAAGCTGTTGATAGATGTAGTGTCAATAAAGTTTCCACTCTTGAAGCTAGTTAGTAGAGTATACAAAGATGAGGTAGAGTTGGAAACCTACATCCGCTCTGATGCTTATGGTACCTGCAATCAAGCCAGGAATTGTTCAAATCCCAAAATTAAAGGGGCAGTTGTGTTTTATGAACAAGGCCCTCAATCATTTGATTATAGCATACGCCTCAATCACACATGGGCTTTCTCCGGTTTTCCCGATGTTACAACAATAATGGATACAAATGGCCCTTTTCTTAATGACTTGGAACTTGGTGTTAGTGCTGTACCAACAATGCAATACAGCTTTAGTGGGTTTTTGACTTCGATGCAGAAAATGGATGCAAGTATGCAAGGTGGGTCTAGAGATTCTGTATTTTATAGAGATGAATATGAGGGGCTCCAGCAAATGGTTGATTCATTCATAATATTAATAGCGCAACAGTCTGACTTAAATTTTAGTGCTGAAAGTCTAACGCTTCCTCTTCCAGGCTTCCATGACACTGTTTTCTCTTTGAAAAATCCATGGACTCAGTTTAACCCTTCTCACATTCGAATAGCTCCATTTCCCACTCGAGAGTATACTGATGATCAGTTCCAGTCAATCATAAAGAAAGTCATGGGAATATTGTACTTGTTGGGGTTTCTCTATCCAATTTCTCGCCTAATCAGTTATTCTGTGTTTGAGAAGGAACAGAAGATTAAAGAAGGACTCTATATGATGGGCTTGAAAGATGGTATATTTCATCTTTCTTGGTTTATCACATATGCATTGCAGGTTCCCACCTTCAGAATCTTGAAGATTATTGCTTCTTTACTTTCACCTACTGCATTTGCTTTGGGTTCGATCAACTTTGCTGATTATGAGCGTGCACATGTTGGACTTCGTTGGAGCAACATATGGCGGCCTAAGCCTCTTTTATTTCAACATGAAGCATGGCCAACTATTGATGTTTCAGTTTATGAATTGCTATATTTGATGGCACTTGAAGAAAAGAGAAATGTTCATCCTAAGCCTCTTTTATTTCAACATGAAGCATGGCTAACTATTGATGTTTCAGTTTGTGAATTGCTGTATTTGATGGCACTTGAAGAAAAGATAAATGTTCATGTTCTTCCAAAGGAATATGGAAAGAGATCCACATGGAGCTTTATTTTCCAAAAGGACTTTTGGAGGAAGAAAAATGTTGCAAAACATTGTTCCTCCTGTTCTGAATTTAAAATATCTGGTAAGAATTCTGAATCAGAAGAGAATTTTTCAGGGGAATATAGTTCCAAACCTGCCATAGAAGCAATAAGCATAGACATGAAACAACAGGAGCTTGATGGCAGGTGCATTCAAATCAGGAATTTACATAAAGTGTATGCTACAAAGAAAGGTGATTGCTGTGCTGTTAACTCATTACAGCTGACACTGTACGAAAGTCAGATTCTTGCTCTCCTAGGACATAATGGAGCTGGGAAAAGCACGACAATCTCTATGCTTGTTGGTCTGCTTCCTCCTACTTCTGGGGATGCTTTGGTATTTGGAAAGAACATTGTATCCGATATTGATGAGATACGGAAGGTTTTGGGTGTCTGCCCACAGCATGATATACTCTTTCCTGAATTAACAGTTAGGGAACATTTAGAGCTATTTGCCATATTAAAGGGAGTGGAGGAACACTTACTGGACAATGCTGTTATTAATATGGCTGATGAGGTGGGCCTGGCTGATAAAATCAACAGTATTGTGAGAACTCTTTCCGGTGGCATGAAGAGGAAATTATCTCTAGGAATTGCATTGATTGGAGACAGTAAGGTTATAGTCCTTGATGAACCTACTAGTGGAATGGATCCATACTCAATGCGCTTGACTTGGCAATATTTATGTATTGGTGCAACTCTGAAGAATTCCTGTTCCCTTTTCTTGAAGCATCATTATGGAGTTGGTTATACTCTAACCCTTGTCAAGCCTGCTCCTACTGCTTCTATAGCCAGTGATATAGTATACCGTCATGTTCCATCTGCAACATGTGTAAGCGAGGTTGGAACGGAGATTTCTTTCAGGCTACCAATGACATCCTCATCAGCCTTTGAGAGGATGTTTAGGGAAATTGAAGGTTGCATGAAAAAACCAGGTTTAAACGTGGAATTGAGTGGCACTGGGGACAAAGACAGTTTTGGTATTGAAAGCTATGGTATATCAGTAACAACCCTGGAGGAGGTATTTCTTAGAGTTGCAGGATGTGACGATGACGAAGTTGAATGCTTTGAAGAAAATAACCATTCCCTTATATCAGACTCTGTGGCTTCTCTCAAGCCACATCCTGATCAGCAATCACTGACACTTTCAACTTCTCACTTTAATCCTCTATTGAGTGGCGGGGGTGGGGGAGGTCCAATTCCATTTAATCTATCTTTGCCAATTGCTGAAAAGGTAGCGCAAAATGTCATAGGAGGGTGGATTCAAAGGTTCAAGTCAAGCTCGTACAGATTCCCTAATTCAGAAAAAGCATTAGCTGATGCAGTGGAAGCAGCAGGGCCAACTCTGGGACCTGCTCTACTTTCAATGAGTGAATATTTGATGTCTAGCTTTAATGAATCCTACCAATCTAGGTATGGGGCAATTGTGATGGATGATCAAAGTAATGATGGAAGCTTAGGATACACTGTATTACACAATAGTTCTTGTCAACATGCTGCTCCCACCTTTATCAATTTGATGAATTCTGCTATTCTTAGGCTTGCAACTCGAGACACAAATATGACAATTCAAACACGCAACCACCCTCTACCAACGACACAAAGCCAGCGCTTACAACGTCATGACCTGGATGCCTTTTCTGCTGCAGTTATTGTCAACATTGCTTTCTCTTTTATACCCGCCTCATTTGCTGTTTCAATTGTTAAGGAACGTGAAGTGAAAGCTAAGCAGCAACAACTAATCAGTGGGTTCTGTGCTATTTTGGGGAAGAATGTTGGGATTCACTCCCATTTTCATTCAGTCATATCAGAAACACCAATCCCCTCCTGCACTTATGTGCCCTTCCCGCTCAGAGGGACCCCAAACCTGAAGGCCCATTTTTCTCTGGAACTTGTGTAA 3231 0.4095 MGAAWRQLKVMLRKNCLLKIRHPFVTAAEGEYLAFAPDTDETKLLIDVVSIKFPLLKLVSRVYKDEVELETYIRSDAYGTCNQARNCSNPKIKGAVVFYEQGPQSFDYSIRLNHTWAFSGFPDVTTIMDTNGPFLNDLELGVSAVPTMQYSFSGFLTSMQKMDASMQGGSRDSVFYRDEYEGLQQMVDSFIILIAQQSDLNFSAESLTLPLPGFHDTVFSLKNPWTQFNPSHIRIAPFPTREYTDDQFQSIIKKVMGILYLLGFLYPISRLISYSVFEKEQKIKEGLYMMGLKDGIFHLSWFITYALQVPTFRILKIIASLLSPTAFALGSINFADYERAHVGLRWSNIWRPKPLLFQHEAWPTIDVSVYELLYLMALEEKRNVHPKPLLFQHEAWLTIDVSVCELLYLMALEEKINVHVLPKEYGKRSTWSFIFQKDFWRKKNVAKHCSSCSEFKISGKNSESEENFSGEYSSKPAIEAISIDMKQQELDGRCIQIRNLHKVYATKKGDCCAVNSLQLTLYESQILALLGHNGAGKSTTISMLVGLLPPTSGDALVFGKNIVSDIDEIRKVLGVCPQHDILFPELTVREHLELFAILKGVEEHLLDNAVINMADEVGLADKINSIVRTLSGGMKRKLSLGIALIGDSKVIVLDEPTSGMDPYSMRLTWQYLCIGATLKNSCSLFLKHHYGVGYTLTLVKPAPTASIASDIVYRHVPSATCVSEVGTEISFRLPMTSSSAFERMFREIEGCMKKPGLNVELSGTGDKDSFGIESYGISVTTLEEVFLRVAGCDDDEVECFEENNHSLISDSVASLKPHPDQQSLTLSTSHFNPLLSGGGGGGPIPFNLSLPIAEKVAQNVIGGWIQRFKSSSYRFPNSEKALADAVEAAGPTLGPALLSMSEYLMSSFNESYQSRYGAIVMDDQSNDGSLGYTVLHNSSCQHAAPTFINLMNSAILRLATRDTNMTIQTRNHPLPTTQSQRLQRHDLDAFSAAVIVNIAFSFIPASFAVSIVKEREVKAKQQQLISGFCAILGKNVGIHSHFHSVISETPIPSCTYVPFPLRGTPNLKAHFSLELV 1076
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03405 1076 CDD ABC_subfamily_A 495 672 - -
Spst1g03405 1076 ProSitePatterns ABC transporters family signature. 630 644 IPR017871 GO:0005524|GO:0016887
Spst1g03405 1076 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 495 690 IPR027417 -
Spst1g03405 1076 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 495 729 IPR003439 GO:0005524
Spst1g03405 1076 Pfam ABC transporter 515 658 IPR003439 GO:0005524
Spst1g03405 1076 Pfam ABC-2 family transporter protein 186 312 IPR013525 GO:0016020|GO:0140359
Spst1g03405 1076 Pfam ABC-2 family transporter protein 916 1027 IPR013525 GO:0016020|GO:0140359
Spst1g03405 1076 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 34 307 IPR026082 GO:0016020|GO:0055085|GO:0140359
Spst1g03405 1076 Gene3D - 472 691 IPR027417 -
Spst1g03405 1076 SMART AAA_5 523 718 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03405 Spst-Chr1 42680242 42717747 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03405 510 677 Calmodulin-binding Proteins AT2G36910 28.652 2.91e-11 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03405 K05643 - cave:132162608 932.554
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03405 1 42680242 42717747 Spst1g03405 1 42680242 42717747 ECH