Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03395 ATGTTCTTGCTAAGTAGCACAAGAATAAGACCCCATCACAAACTTCTATTTCGACACTTCCTGAAGAACATGGCCGAGTGTTTTGTCTTTGATATTGCTGAATCACTGCTAAGGAAGTTAGCTTCTTATGTTTACGAAGAAGCTTCTCGAGCCTATGGTGTGTATGAAGATCTTCGAGGGATCAAAGACACCTTGTTAATAGTCAAAGGTGTGCTATTAGATGCTGAGGAGAAGAAGGAACAAAAGCATGGGTTGCGGGAATGGCTCAGGCAGATTCAAAACGTCTGCTTCGATGCTGAAGACGTACTGGATGAATTTGAGTGCCAAAACTTGCGAAAGATAATTGTCAAAGCTTCAGGCAGCACCAGGATGAAGGTAGGTCACTTCTTTTCTTCATCTAACTCTCTTGTTTTCCGTCTTAAGATGTCTCGTCAAATGAAACAAGTTAGGAGTAGATTGGATAAGATAGCAGTTGATGGGAACAAGTTTTGTCTAGAGAGGATTGATGTTGACAACAGACTTGTGCAAAGGAGAGAAATGACTTATTCCCACGTTGATGCTTCAGGGGGAGATAAAAGTCTGAGTGTTATTCCCATAGTGGGTATTGGAGGGTTGGGAAAGACCACACTTGCAAAGTTGGTGTTCAATGATAAGAGGATGGATGAGCATTTTCAATTGAAGATGTGGGTGTGTATCTCTGATGAGTTTAACATAAGGCAGATAGTAGTTAAAATGATCAACTCTGCTTCTGCTAATGCTTCAGCTTCGGCTATTGCTCTTGCTCACCAAGAAAACATTAAAAACTTAGACATTGAGCAGCTACAAAGTCGTCTTAGACACAAGCTTTCTGGTCAGAAGTTTTTGCTAGTCTTGGATGATGTTTGGAATGATAATCGTGCAAAATGGATAGAGTTGAAAGATTTAATAAAAGTGGGTGCAGTTGGAAGCAAGATCTTGGTGACAACACGAAGTAATTCAATTGCTTCAATGATGGGTACTGTTCCTTCGTATGTTTTAGAAGGTCTTTCTATGGAGAATTGTTTTTCTCTGTTTAACAAATGGGCATTTAAGGAAGGCGAAGAAAAGAAATATCCCAGTCTAGTAGAGATTGGAAAAGAAATTGTGAAAAAATGCCGAGGGGTTCCATTAGCAGTCCGAACTTTAGGAAGTTCTCTGTTCTTAAATTTTAATTTAGAAAGGTGGGAATTTGTAAGAGACCATGGCATATGGAACTTAAAACAAGAGAAAGATGACATTTTACCTGCTCTTAAGTTGAGCTATGACCACATGCCTTCCTATTTGAGGCATGGTTTTGCTTTCTTTTCTTTATACCCAAAAAATTATGGCTTTACAAGTGCTGAAATTGCCAACCTTTGGGTCTCACTTGGCTTACTTCGATCTCAAGTTGGAAGTCAAAAGCTAGAGAATGCTGCAAGACAACGTATAGACGAGTTATATTCGAGATCATTTCTTGAGGATTTTCAGGACTTTGGCCACCTTTACTATTTCAAAGTGCATGATTTGGTACATGATCTTGCTCTTTACGTTGCAAAAGAAGATATTCTTCTGGTAAACTCAGGTACCCGGAATATACCTGAGCAAGTAAGGCATTTATCAGTTGTTGAAAATGATTCACTCAGCCATGCTTTGTTCCACAAGTCAAAAAGTGTGAGAACCATATTATTTCCAATTGAAGGAATGGGTGTTGACAGTGACGCTCTTTTGGATGCATGGATAACAAGATATAACTTCTTGAGGATTTTAGATGTAAGTGATTCCTCTTTTGAGACACTTCCCAATTCAATTGCTAAACTGGAGCACCTGCGAGCTCTCAGTCTTGAAAATAACCGCAAAATAAAAAGACTTCCTCGTTCTATATGCAGACTCCAAAATTTGCAATTTCTGTCTTTAAGGGGATGTGTGGAGCTTGAAACATTGCCTAAAGGATTAGGCATGTTGATCAACCTTCGAAATTTGTTTATCACCACAAAACAGTCTATTCTGTCAGAGGATGAATTTGCAAGCTTGAGAAATCTTCATACTTTGAGTTTTGAATTTTGTGACAATTTGATGTTTCTGTTCCGAGGGGCACAACAACTCGGATCTCTTGAAGTTTTGATAGTTCAATCATGTAGGAGCCTAAAGTCCTTTCCTTTTCATATTCTCCCTAAACTGGAGGTTCTTTTTGTCATTAGGTGCGAGATGCTAAATCTGTCTTTGAACTGTGAAAGTCCAATCCACAAACTGAGGATGAAGTTTCTGCATATTGAGCAATGTCCAAGGCAACAAATATTGCCTCGATGGATTGAAGGAGCTGCAGAAACTTTGCAGACATTGTTAATTTCAAATTTTCATAGTCTTGAGATGCTTCCTCAGTGGCTTACAACAATGACTCGTCTTAAGATGCTCCATATTGTTAACTGTCCTAAACTGTTGTATCTCCCCAGTGGCATGAATCGCCTCAGTGCCCTTGAAGATTTAAGCATAGATGGTTGCTTGGAATTATGTCAAAAATGTGAACCACAATCTGGTGAGTACTGGTCCTTCATTGCTCACATCAAACGCCTTTCCATTGGAGAAACAAGACAAAGGAACCTCCTTTTCCAAATGCAGAAACAGATCCGATTGAAATTGCATGATTTGTAG 2646 0.3915 MFLLSSTRIRPHHKLLFRHFLKNMAECFVFDIAESLLRKLASYVYEEASRAYGVYEDLRGIKDTLLIVKGVLLDAEEKKEQKHGLREWLRQIQNVCFDAEDVLDEFECQNLRKIIVKASGSTRMKVGHFFSSSNSLVFRLKMSRQMKQVRSRLDKIAVDGNKFCLERIDVDNRLVQRREMTYSHVDASGGDKSLSVIPIVGIGGLGKTTLAKLVFNDKRMDEHFQLKMWVCISDEFNIRQIVVKMINSASANASASAIALAHQENIKNLDIEQLQSRLRHKLSGQKFLLVLDDVWNDNRAKWIELKDLIKVGAVGSKILVTTRSNSIASMMGTVPSYVLEGLSMENCFSLFNKWAFKEGEEKKYPSLVEIGKEIVKKCRGVPLAVRTLGSSLFLNFNLERWEFVRDHGIWNLKQEKDDILPALKLSYDHMPSYLRHGFAFFSLYPKNYGFTSAEIANLWVSLGLLRSQVGSQKLENAARQRIDELYSRSFLEDFQDFGHLYYFKVHDLVHDLALYVAKEDILLVNSGTRNIPEQVRHLSVVENDSLSHALFHKSKSVRTILFPIEGMGVDSDALLDAWITRYNFLRILDVSDSSFETLPNSIAKLEHLRALSLENNRKIKRLPRSICRLQNLQFLSLRGCVELETLPKGLGMLINLRNLFITTKQSILSEDEFASLRNLHTLSFEFCDNLMFLFRGAQQLGSLEVLIVQSCRSLKSFPFHILPKLEVLFVIRCEMLNLSLNCESPIHKLRMKFLHIEQCPRQQILPRWIEGAAETLQTLLISNFHSLEMLPQWLTTMTRLKMLHIVNCPKLLYLPSGMNRLSALEDLSIDGCLELCQKCEPQSGEYWSFIAHIKRLSIGETRQRNLLFQMQKQIRLKLHDL 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03395 881 Pfam NB-ARC domain 191 428 IPR002182 GO:0043531
Spst1g03395 881 Pfam Rx N-terminal domain 34 114 IPR041118 -
Spst1g03395 881 Gene3D Ribonuclease Inhibitor 519 880 IPR032675 -
Spst1g03395 881 CDD RX-CC_like 25 157 IPR038005 -
Spst1g03395 881 PANTHER DISEASE RESISTANCE PROTEIN RP 77 829 IPR044974 GO:0006952
Spst1g03395 881 Gene3D - 341 425 IPR042197 -
Spst1g03395 881 Gene3D - 166 336 IPR027417 -
Spst1g03395 881 Gene3D - 33 146 - -
Spst1g03395 881 PRINTS Disease resistance protein signature 378 392 - -
Spst1g03395 881 PRINTS Disease resistance protein signature 281 295 - -
Spst1g03395 881 PRINTS Disease resistance protein signature 698 714 - -
Spst1g03395 881 PRINTS Disease resistance protein signature 196 211 - -
Spst1g03395 881 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 189 440 IPR027417 -
Spst1g03395 881 Gene3D - 426 515 IPR036388 -
Spst1g03395 881 Pfam Leucine rich repeat 585 640 IPR001611 GO:0005515
Spst1g03395 881 SUPERFAMILY L domain-like 504 850 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03395 Spst-Chr1 42580911 42583757 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03395 165 835 WRKY Transcription Factor Family AT5G45050 22.191 2.14e-11 66.2