Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03387 ATGGCCGAAACATTTCTCTTCAGAATCGCGGACTCACTCATAGCAAAGCTTGCGTCTCAACTTTATGAAGAAGCTTCTCGGGTGATGGGTTTGTACCACCATCTGCAAGAGTTTACACATACTCTCTCATTAGTCAAGGCTGTGTTGTTGGATGCTGAGCAAAAGCAGGAGCATAACTATGAGCTGCGGGAATGGCTGAGGCAGCTCAAACGTGTCTTCTGTGATGCGGAAGATGTGCTCGATGAATTTGAGTGCCAAATACTACAAAAACAAGTTGTCAAAGCTCATGGTACCACCATAACCAAGGTAGATCGCTTCTTCTCAAGCTCTAATCCACTTGTTTTTCGTTACAAGATGAGTCAACAAATAAAAGATATCACCCAGAGACTAGACAAGGTCGCAGCTGATAGGCATAAATTTGGTCTTCAAACAATTGATGTTGATAGACGTGTGGTGCATCGGAGAGAGATGACACACTCCCATGTTAGTGATTCTGATGTTATTGGAAGGGAGCATGACAAAGGAAAGATTATACATTTTTTGATGCAAAAGAATCCCATTGATGATGATCAAAGTCTCTCTGTGATCCCCATAGTGGGGATGGGAGGTTTGGGAAAGACCACACTTGCAAAGTTTGTGTTTAATGATGACAGAATAAACGAGTGTTTCCTATTGAAGATGTGGGTGTGTGTTTCTGAAGACTTCGACATTAAGCAAGTGATTGTTAAAATCATCAATTCGGCTAATGATTCTGCGTCACTCGCTCATGCTCATGATGGCCAACAGAATTTGAACATACTAGACATGGAGCAGCTGCAGAATCAATTGAGAAACAAACTTGCTGGTAAAAAATTCTTACTCGTCTTGGACGACGTATGGAATGAAGACCGTGTTAAATGGGTTGAGTTGAGGAATTTAATACAAGTTGGTGCTGCTGCAGGAAGTAAAATTCTAGTGACTACACGTAGTCACTCCATTGCATCTTTAATGGGGACGGTTTCCTCTCACATTTTACAAGGTCTTTCCCTGGAGGATTCCTTGTCTCTGTTTATCAAATGGGCATTTAAAGAAGGAGAAGAGGAAAACTATCCTCAGTTGGTAAATATTGGCAGAGATATCGTGAAAAGATGCAGAGGGGTTCCATTGGCAGTGAGAACATTAGGGAGTTTACTATTTTCCAAATTTGAGGCAAATGAGTGGGAATATGTGAGAGACAATGAAATTTGGAATTTGTCACAGAAAAGAGAGGATATTTTACCTGCACTCAAATTAAGTTATGATCTTATGCCATCCTATTTGAGGCAATGCTTTGCTTTGTTTTCCCTTTATCCAAAGGATTATGAATTCGTTAATTTTGAGGTAACTACTCTTTGGGGAGCACTCGGACTCCTTGTGTCTCTAAAAAACAATATGACACAAGAAGATATTGCCGACCAGTATTTCTATGAACTACTGTCAAGATCTTTTATTCAAGATTTTGTCAACTATGGGACAACCTATACATTTAAAATACATGATCTAGTGCATGATCTAGCCCTGTTTGTTGCAAAAGACGAGTGTCTACTTGTAAATTCCCACATTCGAAGTATACCTGAGAGTGTTCGTCATCTGTCTTTTCTTGAAAGCGATTTGGATGGAAAATCATTCAGTGCAAAATCAGTAGGTGTGAGAACCATTCTATTTCCTAAGGCTGGTGTGGGAGCCAAGAGTGAAACTTTCTTTTCATTGGTTTCAAGGTACAAATACTTGCGTATTTTGGATTTAAGTTATTCTACAGTTGAAACTTTACCTCATTTCATTGGGAAGTTAAAACATTTAAGATCTCTCAGTCTTTATAATAATAAGAAAATTAGGAGACTCCCTGATTCTATTTGTGAGCTTCAAAGTTTGCAAGTGTTGGACCTTGGTGGATGCCAGGAACTGGAAGCATTACCCAAAGGATTAAGAAAATTGATCAGTCTCCGAGATTTTGTCATCACCACAAAGCAAGCTGTTTTGCCCGAGAATGACATTTCAAACTTGAGTTCTCTTCAATATTTGACTATTGAAAGTTGTGATAACGTGAAGTCTTTATTCTCAGGGATAGAACTTCCTGTTCTGAAAGCATTGAATGTTAGTAGCTGTAAGAGACTAGAGTCTTTACCACTTGACAGTAAACATTTTCCTGCATTAGAGATTTTGTGTCTTAGGATTTGTGACGAGTTGGAATTGTCCAAGGGTCATGAAGACCAGAACTTCAACTTAAAGTTAAAAACAATACTATTTACTTCACTGCCACAGCTAGGGACATTACCTCATTGGCTTCAAGGATCTGTAAACACATTACTATCCTTGAGGCTAGAACACTGCCACAATCTTGAGGCGCTTCCTGATTGGCTGTCAATGCTATCTTGTCTGAAAGCACTTGATATTGCAGATTGTCCGAAGTTGCGTTGTCTTCCAGATGGCATCAATTGCCTCACTGCCCTTGAACGTTTGGAAATCATAGACTGTCCTGAATTATTCAGAAAATTCACGCTGCAAGTTGGAGAGTATTGGAACCAAATATCACACATCAAACGGATTAGCATTGTTGAAACAAAAGATTTGGAATAG 2595 0.3938 MAETFLFRIADSLIAKLASQLYEEASRVMGLYHHLQEFTHTLSLVKAVLLDAEQKQEHNYELREWLRQLKRVFCDAEDVLDEFECQILQKQVVKAHGTTITKVDRFFSSSNPLVFRYKMSQQIKDITQRLDKVAADRHKFGLQTIDVDRRVVHRREMTHSHVSDSDVIGREHDKGKIIHFLMQKNPIDDDQSLSVIPIVGMGGLGKTTLAKFVFNDDRINECFLLKMWVCVSEDFDIKQVIVKIINSANDSASLAHAHDGQQNLNILDMEQLQNQLRNKLAGKKFLLVLDDVWNEDRVKWVELRNLIQVGAAAGSKILVTTRSHSIASLMGTVSSHILQGLSLEDSLSLFIKWAFKEGEEENYPQLVNIGRDIVKRCRGVPLAVRTLGSLLFSKFEANEWEYVRDNEIWNLSQKREDILPALKLSYDLMPSYLRQCFALFSLYPKDYEFVNFEVTTLWGALGLLVSLKNNMTQEDIADQYFYELLSRSFIQDFVNYGTTYTFKIHDLVHDLALFVAKDECLLVNSHIRSIPESVRHLSFLESDLDGKSFSAKSVGVRTILFPKAGVGAKSETFFSLVSRYKYLRILDLSYSTVETLPHFIGKLKHLRSLSLYNNKKIRRLPDSICELQSLQVLDLGGCQELEALPKGLRKLISLRDFVITTKQAVLPENDISNLSSLQYLTIESCDNVKSLFSGIELPVLKALNVSSCKRLESLPLDSKHFPALEILCLRICDELELSKGHEDQNFNLKLKTILFTSLPQLGTLPHWLQGSVNTLLSLRLEHCHNLEALPDWLSMLSCLKALDIADCPKLRCLPDGINCLTALERLEIIDCPELFRKFTLQVGEYWNQISHIKRISIVETKDLE 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03387 864 Gene3D - 147 337 IPR027417 -
Spst1g03387 864 Pfam NB-ARC domain 171 427 IPR002182 GO:0043531
Spst1g03387 864 PANTHER DISEASE RESISTANCE PROTEIN RP 63 831 IPR044974 GO:0006952
Spst1g03387 864 Pfam Leucine rich repeat 582 639 IPR001611 GO:0005515
Spst1g03387 864 PRINTS Disease resistance protein signature 279 293 - -
Spst1g03387 864 PRINTS Disease resistance protein signature 377 391 - -
Spst1g03387 864 PRINTS Disease resistance protein signature 195 210 - -
Spst1g03387 864 PRINTS Disease resistance protein signature 625 641 - -
Spst1g03387 864 FunFam Probable disease resistance protein At1g61300 149 335 - -
Spst1g03387 864 CDD RX-CC_like 11 134 IPR038005 -
Spst1g03387 864 Gene3D - 10 124 - -
Spst1g03387 864 SUPERFAMILY L domain-like 503 840 - -
Spst1g03387 864 Gene3D Ribonuclease Inhibitor 565 861 IPR032675 -
Spst1g03387 864 Gene3D - 425 513 IPR036388 -
Spst1g03387 864 Gene3D - 340 424 IPR042197 -
Spst1g03387 864 Pfam Rx N-terminal domain 12 98 IPR041118 -
Spst1g03387 864 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 150 439 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03387 Spst-Chr1 42464572 42467166 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03387 178 834 WRKY Transcription Factor Family AT5G45050 23.021 1.61e-12 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03387 - - gmx:100805394 1251.5