Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03380 ATGGGGACTCCAGAATTCCCAAATCTCGGCAAGCATTGTTCTGTTTCTGATTGCAGGCTGCTTGATTTCTTGCCCTTCACATGCGATCGCTGTGAGCAGGTACATTGTTTGAAACACCGAGGTTATGTTGAACATAAGTGCACAAAGCAAAACGATGTCAAAGTTGTCATATGTCCTCTTTGTGCGAAAGGAGTTCACATCATTCCAGATCAAGATCCCAACATAACTTGGGACAATCATGTTAACATTGATTGTGACCCATCAAATTACGAAAAAGTGACAACAAAGAGAAAATGCCCTGCTCCTGGATGCAAAGAGTTACTAGTATTCTCCAACACAGTTAAGTGTAGGGATTGTATGGAAGACCATTGTTTGAAGCACCGGTTTGGCTCTGATCACAAATGTTCCGGTCCCAGGAAGTTGGAGACAAGTTTTTCATTCATGGGTTTTTTGAATAGGAGTAAAAATGAGGAGCCAAAGCCCATTTTAACCTCAACAGCATCATCTAACTGGACTTCAAGCTTTCTCAACGTGGCTTATAATATTCGTTCATCAGCTGAAGCGAGCATGTCAAAATTGAGCAATGAAATTAACCAAGTTTTGCAGGCAGCTAGGGATGGTGTGGGGCAGAACAGTGGTAGTGGAAATCAAGAGGAAAGTTGCCCTGAATGTGGTGTCAAGTTTTCCTCTGTGACTTCTTTGGTGGATCATGTGCAAAAAAATCACGAAAGCAATGGGAACCGACTAGGGGTTAAGAAGATTAATGCATGCCCCAAGTGTAGTAGAGGGTTTGTAGATCCGGTGTCCCTTGTGGAGCATGTTGAGAAGGATCATGGTGGTGGTTCTGGAGCTTACATGTGA 861 0.4309 MGTPEFPNLGKHCSVSDCRLLDFLPFTCDRCEQVHCLKHRGYVEHKCTKQNDVKVVICPLCAKGVHIIPDQDPNITWDNHVNIDCDPSNYEKVTTKRKCPAPGCKELLVFSNTVKCRDCMEDHCLKHRFGSDHKCSGPRKLETSFSFMGFLNRSKNEEPKPILTSTASSNWTSSFLNVAYNIRSSAEASMSKLSNEINQVLQAARDGVGQNSGSGNQEESCPECGVKFSSVTSLVDHVQKNHESNGNRLGVKKINACPKCSRGFVDPVSLVEHVEKDHGGGSGAYM 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03380 286 Pfam AN1-like Zinc finger 13 51 IPR000058 GO:0008270
Spst1g03380 286 Pfam AN1-like Zinc finger 99 138 IPR000058 GO:0008270
Spst1g03380 286 ProSitePatterns Zinc finger C2H2 type domain signature. 221 242 IPR013087 -
Spst1g03380 286 SMART c2h2final6 255 278 IPR013087 -
Spst1g03380 286 SMART c2h2final6 219 242 IPR013087 -
Spst1g03380 286 SUPERFAMILY beta-beta-alpha zinc fingers 220 274 IPR036236 -
Spst1g03380 286 ProSiteProfiles Zinc finger C2H2 type domain profile. 255 283 IPR013087 -
Spst1g03380 286 ProSiteProfiles Zinc finger C2H2 type domain profile. 219 247 IPR013087 -
Spst1g03380 286 Coils Coil 183 203 - -
Spst1g03380 286 Gene3D Classic Zinc Finger 186 282 - -
Spst1g03380 286 SMART AN1_Zf_4 99 140 IPR000058 GO:0008270
Spst1g03380 286 SMART AN1_Zf_4 13 54 IPR000058 GO:0008270
Spst1g03380 286 ProSiteProfiles Zinc finger AN1-type profile. 7 55 IPR000058 GO:0008270
Spst1g03380 286 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 5 246 - -
Spst1g03380 286 ProSitePatterns Zinc finger C2H2 type domain signature. 257 278 IPR013087 -
Spst1g03380 286 Gene3D - 2 63 IPR035896 -
Spst1g03380 286 Gene3D - 85 148 IPR035896 -
Spst1g03380 286 SUPERFAMILY AN1-like Zinc finger 6 52 IPR035896 -
Spst1g03380 286 SUPERFAMILY AN1-like Zinc finger 91 141 IPR035896 -
Spst1g03380 286 ProSiteProfiles Zinc finger AN1-type profile. 93 143 IPR000058 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03380 Spst-Chr1 42394013 42395353 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03380 1 284 C2H2 Transcription Factor Family AT2G41835 58.478 6.16e-107 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst1g03380 zf-AN1 2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03380 - - gmx:100806459 497.278
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03380 1 42394013 42395353 Spst1g03380 1 42394013 42395353 ECH
Spst1g03380 1 42394013 42395353 Spst7g00325 7 2550314 2553591 PCT