Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03365 ATGAATACATCTGGAACTGGTAACGTCATCACTCGTCACTGTGGTATCATTCGGTATGATATGGACATTGTGAGGGGCATGAGGGGTAATTCACGATGGCATGCACATAGAGAGGAAGCATGGGATAAAGGTGACCAAAGTCTCGAGAATCAGGCTGTGTACGGAGCTACCAAACCCTTGGACGTAATAGCATTGTCATTTTATAGATCAAGGACATTCTCCTGCGCAAGGCATTGTCAACGTCGAGGGCATCACCAAGCAGTGATACTCAAAGCACCACTTTACAGTGTTCTAATCCTAATATCAACCATGGATACTTGCAAGAAGTCCCCCTTGAAGCCATGGAAGAAAGGGCCAACTAGGGGGAAAGGTGGCCCCCAGAATGCCTCGTGCCAGTACCGAGGTGTTAGGCAGAGAACTTGGGGCAAATGGGTTGCTGAGATAAGAGAGCCAAAGAAAAGAACCAGGCTCTGGCTTGGTTCTTTTGGCACAGCTGAAGAAGCTGCCATGGCTTATGATGAAGCTGCAAGGAGACTCTATGGACCAGATGCATACCTTAATCTTCCCCACCTGCAACCCAGGTCTACACCAGGAAAGTTCAAATGGTTCCCTTCCGAGAACTTTATTTCAATGTTTCCTTCCTGTGGATTACTCAACGTAAATGCTCAACCTAGTGTTCATTTAATCCATCAGAAGCTACAAGAGCTTAAGCAAAATTCAGTTGTGAGGCAATCCCCAAATAGTTCATCCAATGATCAAGAGGCAGAAATACAGAATGTAGACAGCACAAATCATGGAGAAAATCCTCCAAATGATGCTCAAACATCACCAGAGGAGGTTCTTGGAGATCTTCAAGACAAACCCCAGATAGACCTCCATGAGTTTCTTCAACAACTGGGAATACTTAAAGAAGAAAGACAGTCAGACAGAACTGATAGCACAGAAAGTTCAACAGTGCCTGAAGCTGTGTTGAGAGATGGCAATGATCAATTGGGAGTGTTTTCTGACACAAGTGTTAACTGGGAGGCATTGATTGAGATGCATGGAATTGCAGGTATTCAGGAATCAGAATCTAGCCAGCTTGAATATAGGCCAAATGATGACCTTACTTTCTCAACTTCCATTTGGAACTTCTAA 1137 0.445 MNTSGTGNVITRHCGIIRYDMDIVRGMRGNSRWHAHREEAWDKGDQSLENQAVYGATKPLDVIALSFYRSRTFSCARHCQRRGHHQAVILKAPLYSVLILISTMDTCKKSPLKPWKKGPTRGKGGPQNASCQYRGVRQRTWGKWVAEIREPKKRTRLWLGSFGTAEEAAMAYDEAARRLYGPDAYLNLPHLQPRSTPGKFKWFPSENFISMFPSCGLLNVNAQPSVHLIHQKLQELKQNSVVRQSPNSSSNDQEAEIQNVDSTNHGENPPNDAQTSPEEVLGDLQDKPQIDLHEFLQQLGILKEERQSDRTDSTESSTVPEAVLRDGNDQLGVFSDTSVNWEALIEMHGIAGIQESESSQLEYRPNDDLTFSTSIWNF 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03365 378 Gene3D AP2/ERF domain 131 190 IPR036955 GO:0003700|GO:0006355
Spst1g03365 378 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 98 334 - -
Spst1g03365 378 ProSiteProfiles AP2/ERF domain profile. 132 189 IPR001471 GO:0003700|GO:0006355
Spst1g03365 378 SUPERFAMILY DNA-binding domain 132 190 IPR016177 GO:0003677
Spst1g03365 378 PRINTS Ethylene responsive element binding protein signature 155 171 IPR001471 GO:0003700|GO:0006355
Spst1g03365 378 PRINTS Ethylene responsive element binding protein signature 133 144 IPR001471 GO:0003700|GO:0006355
Spst1g03365 378 MobiDBLite consensus disorder prediction 303 324 - -
Spst1g03365 378 MobiDBLite consensus disorder prediction 239 279 - -
Spst1g03365 378 FunFam Ethylene-responsive transcription factor 2 131 190 - -
Spst1g03365 378 Pfam AP2 domain 131 181 IPR001471 GO:0003700|GO:0006355
Spst1g03365 378 SMART rav1_2 132 195 IPR001471 GO:0003700|GO:0006355
Spst1g03365 378 CDD AP2 131 191 IPR001471 GO:0003700|GO:0006355
Spst1g03365 378 MobiDBLite consensus disorder prediction 239 275 - -
Spst1g03365 378 MobiDBLite consensus disorder prediction 112 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03365 Spst-Chr1 42258972 42261154 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03365 108 378 AP2-EREBP Transcription Factor Family AT3G57600 53.025 3.21e-85 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Spst1g03365 AP2 1.6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03365 - - var:108328773 488.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03365 1 42258972 42261154 Spst1g03365 1 42258972 42261154 ECH
Spst1g03365 1 42258972 42261154 Spst7g00301 7 2341859 2342737 PCT