Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03359 ATGGCTGACCCCTACTCCAATTTTTTCTCATCCTCGCCCTTCTTCCGTTTCAATCACCATTTCCCATCTTCAAACCCTTCTCCACACGCTCCCTATGTTCACCACAGTAACTTCATCAACCACTCAAAAACCAACGACGCCACCTTTTTCCACTACCACCACCACAACCATACTTCTACTACTACTACTACTTTTTCTTCTTTTCCACCTTCCCCTCCTTTGAGAGAAGAGCTACCCCTCTTGAGGTTGAGTCCGCCGAAGCAAGAGGAGGAGGAGGAGGACCTTTCTTGCATGGATGTGGAGGAGAGGATCCACATCCACCCCAAAGAGGAAGAGGATGATGAAGATGGGACTGTCACTGTTGCACTCCACATAGGGTTGCCAAGCCCTAGTGCTGCTGAGATGGCTTCTGTGCTCTCTTCTTCCTCAGAGACCACTGACAAAGATCATGGAGATGGTGCTGCCGAGGATTCTTCTGCTGGCTTCAGACTCAACAAGGGCCAGTACTGGATCCCTACCCCTTCTCAGATTCTCATTGGCCCTACTCAGTTCTCTTGCCCTGTTTGCTGCAAAACTTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCACAGTACAGAAAAGGACCTGAATCTCTAAGGGGTACCCAACCGACGGGCATGCTGAGGCTTCCTTGCTACTGTTGTGCCCCAGGGTGCAGAAACAATATTGATCACCCAAGAGCAAAGCCTCTCAAAGACTTTAGAACACTTCAAACGCATTACAAGAGGAAGCATGGGATTAAGCCCTTCATGTGCAGGAAATGCGGCAAGGCTTTTGCAGTGAGGGGAGATTGGAGGACTCATGAGAAGAACTGTGGCAAGCTTTGGTACTGCATCTGCGGCTCCGATTTCAAGCACAAGAGATCTCTTAAAGACCATATTAAAGCTTTTGGGAGTGGCCATGCAGCTTATGGAATCGATGGTTTCGAAGAAGAAGATGAGCCAGCATCTGAGGTAGAACAAGATAATGATGATTCCACCCAGTGA 1041 0.4851 MADPYSNFFSSSPFFRFNHHFPSSNPSPHAPYVHHSNFINHSKTNDATFFHYHHHNHTSTTTTTFSSFPPSPPLREELPLLRLSPPKQEEEEEDLSCMDVEERIHIHPKEEEDDEDGTVTVALHIGLPSPSAAEMASVLSSSSETTDKDHGDGAAEDSSAGFRLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHAAYGIDGFEEEDEPASEVEQDNDDSTQ 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03359 346 Gene3D Classic Zinc Finger 246 321 - -
Spst1g03359 346 ProSiteProfiles Zinc finger C2H2 type domain profile. 184 211 IPR013087 -
Spst1g03359 346 SMART c2h2final6 184 206 IPR013087 -
Spst1g03359 346 SMART c2h2final6 268 288 IPR013087 -
Spst1g03359 346 PANTHER ZINC FINGER PROTEIN WIP2 40 342 IPR043584 GO:0003700|GO:0010468
Spst1g03359 346 FunFam Zinc finger protein WIP2 237 319 - -
Spst1g03359 346 ProSitePatterns Zinc finger C2H2 type domain signature. 186 206 IPR013087 -
Spst1g03359 346 MobiDBLite consensus disorder prediction 132 159 - -
Spst1g03359 346 SUPERFAMILY beta-beta-alpha zinc fingers 250 288 IPR036236 -
Spst1g03359 346 Gene3D Classic Zinc Finger 183 206 - -
Spst1g03359 346 ProSiteProfiles Zinc finger C2H2 type domain profile. 268 288 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03359 Spst-Chr1 42200927 42203326 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03359 1 343 C2H2 Transcription Factor Family AT3G57670 61.856 2.37e-146 416
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst1g03359 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03359 - - gmx:100802907 571.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03359 1 42200927 42203326 Spst1g03359 1 42200927 42203326 ECH
Spst1g03359 1 42200927 42203326 Spst5g00375 5 3093729 3095718 ECH
Spst1g03359 1 42200927 42203326 Spst7g00294 7 2291385 2293602 PCT