Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Spst1g03359 | ATGGCTGACCCCTACTCCAATTTTTTCTCATCCTCGCCCTTCTTCCGTTTCAATCACCATTTCCCATCTTCAAACCCTTCTCCACACGCTCCCTATGTTCACCACAGTAACTTCATCAACCACTCAAAAACCAACGACGCCACCTTTTTCCACTACCACCACCACAACCATACTTCTACTACTACTACTACTTTTTCTTCTTTTCCACCTTCCCCTCCTTTGAGAGAAGAGCTACCCCTCTTGAGGTTGAGTCCGCCGAAGCAAGAGGAGGAGGAGGAGGACCTTTCTTGCATGGATGTGGAGGAGAGGATCCACATCCACCCCAAAGAGGAAGAGGATGATGAAGATGGGACTGTCACTGTTGCACTCCACATAGGGTTGCCAAGCCCTAGTGCTGCTGAGATGGCTTCTGTGCTCTCTTCTTCCTCAGAGACCACTGACAAAGATCATGGAGATGGTGCTGCCGAGGATTCTTCTGCTGGCTTCAGACTCAACAAGGGCCAGTACTGGATCCCTACCCCTTCTCAGATTCTCATTGGCCCTACTCAGTTCTCTTGCCCTGTTTGCTGCAAAACTTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCACAGTACAGAAAAGGACCTGAATCTCTAAGGGGTACCCAACCGACGGGCATGCTGAGGCTTCCTTGCTACTGTTGTGCCCCAGGGTGCAGAAACAATATTGATCACCCAAGAGCAAAGCCTCTCAAAGACTTTAGAACACTTCAAACGCATTACAAGAGGAAGCATGGGATTAAGCCCTTCATGTGCAGGAAATGCGGCAAGGCTTTTGCAGTGAGGGGAGATTGGAGGACTCATGAGAAGAACTGTGGCAAGCTTTGGTACTGCATCTGCGGCTCCGATTTCAAGCACAAGAGATCTCTTAAAGACCATATTAAAGCTTTTGGGAGTGGCCATGCAGCTTATGGAATCGATGGTTTCGAAGAAGAAGATGAGCCAGCATCTGAGGTAGAACAAGATAATGATGATTCCACCCAGTGA | 1041 | 0.4851 | MADPYSNFFSSSPFFRFNHHFPSSNPSPHAPYVHHSNFINHSKTNDATFFHYHHHNHTSTTTTTFSSFPPSPPLREELPLLRLSPPKQEEEEEDLSCMDVEERIHIHPKEEEDDEDGTVTVALHIGLPSPSAAEMASVLSSSSETTDKDHGDGAAEDSSAGFRLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHAAYGIDGFEEEDEPASEVEQDNDDSTQ | 346 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Spst1g03359 | 346 | Gene3D | Classic Zinc Finger | 246 | 321 | - | - | |
Spst1g03359 | 346 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 184 | 211 | IPR013087 | - | |
Spst1g03359 | 346 | SMART | c2h2final6 | 184 | 206 | IPR013087 | - | |
Spst1g03359 | 346 | SMART | c2h2final6 | 268 | 288 | IPR013087 | - | |
Spst1g03359 | 346 | PANTHER | ZINC FINGER PROTEIN WIP2 | 40 | 342 | IPR043584 | GO:0003700|GO:0010468 | |
Spst1g03359 | 346 | FunFam | Zinc finger protein WIP2 | 237 | 319 | - | - | |
Spst1g03359 | 346 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 186 | 206 | IPR013087 | - | |
Spst1g03359 | 346 | MobiDBLite | consensus disorder prediction | 132 | 159 | - | - | |
Spst1g03359 | 346 | SUPERFAMILY | beta-beta-alpha zinc fingers | 250 | 288 | IPR036236 | - | |
Spst1g03359 | 346 | Gene3D | Classic Zinc Finger | 183 | 206 | - | - | |
Spst1g03359 | 346 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 268 | 288 | IPR013087 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Spst1g03359 | Spst-Chr1 | 42200927 | 42203326 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Spst1g03359 | 1 | 343 | C2H2 Transcription Factor Family | AT3G57670 | 61.856 | 2.37e-146 | 416 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Spst1g03359 | None | None | None |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Spst1g03359 | - | - | gmx:100802907 | 571.622 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Spst1g03359 | 1 | 42200927 | 42203326 | Spst1g03359 | 1 | 42200927 | 42203326 | ECH | |
Spst1g03359 | 1 | 42200927 | 42203326 | Spst5g00375 | 5 | 3093729 | 3095718 | ECH | |
Spst1g03359 | 1 | 42200927 | 42203326 | Spst7g00294 | 7 | 2291385 | 2293602 | PCT |