Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03353 ATGGAAGACTATGAAGTGATAGAGCAAATTGGAAGAGGGGCTTTTGGCTCTGCCTTCCTCGTCCTTCACAAGTCCGAGAAAAAGAGGTATGTGCTGAAAAAGATTCGGTTGGCCAAACAGACAGAGAAGTTCAAACGTACTGCACACCAAGAGATGAACCTGATTGCAAAACTAAATAACCCATACATTGTGGAGTATAAAGATGCTTGGGTGGAGAAGGAGGACCACGTATGCATTATAACTGGCTATTGTGAAGGAGGTGACATGGCAGAAAACATAAAGAAAGCTCGAGGGTCATTTTTTCCTGAGGAGAAAGTCTGCAAATGGCTGACTCAGTTGTTGATAGCTGTGGACTACTTGCATTCTAATCGTGTAATCCATAGAGATCTTAAGTGTTCCAACATATTTCTCACCAAAGACAACAACATTCGGCTTGGTGACTTTGGCCTTGCAAAGCGACTTAATGCGGAAGACCTTACTTCCTCGGTTGTTGGAACTCCAAATTACATGTGTCCTGAGCTCCTGGCTGATATACCTTATGGTTATAAATCTGATATGTGGTCTCTTGGTTGCTGCATGTTTGAGATTGCTGGACATCAACCAGCTTTTCGTGCTCCAGACATGGCTGGACTTATCAATAAAATAAACAGATCCTGCATTTCTCCACTGCCAATTGTTTATTCTTCCACACTGAAACAACTTATCAAAAGCATGCTTAGGAAAAACCCAGAACATAGGCCAACCGCAGCTGAATTATTAAGGCATCCGCTTTTACAACCATATGTTCTTCGCTGTCATAATGCATCATCTAATATTCTTCCAGTATATCCCATAGTTAATTCAAAGGATAAAACAAGAAGATCTAATAAATCTAGTGGTGGCAAGGACCATAAGGACAAAGAAGCAAACTTAGTAAATCGTTTGGAACGGATTCATCCAATTGAGGGAAATGGAGATACACACGTGAGTAATCTTCCTAGTGATGCTGTAACAATCTCAACCACTGCAGACGACAATATTGAGACCAGGATTGTTGATCTTACCAGCTTCATAGTGGAATCTTCTACTAGTATTAGTGGCTCAAAAGATGGATCAACAACATCTGAATCAACTATTTGCAGTGTGTGCAAGGAGGACTTTAAAAGTAGACCTGCAAGGGAAACGACTAACAATGAGATCTCTTTAAAGAGTACACAAGAATTCCTGCATGAAGAACAAACAATTGCTGCTAAACATTTTCATAATTTAGAAGATGACATTAATGCAGTGACCAAAGAAGTTGAAGATGATTCTTGCAATGAAGGTTTGGATAATGCTGAAGTACTGAGGGAAGATTCAAACCTAGACAACTCTGGTAAATCAACAATGTCCAGCGCAGGCAGTAGCAGCACTGATAAAGATAAGTCCATCAATGAGGAAAGGCCATCACTAATTATGAATCCTACTTGGGTTGAATATGATACTGAATCGGGAAACCACTTGAATGGATTTACACAAGCCTCAAATATGAACTGCTTGACATCTGATTGTAATGATGCACTTCTAGTTAAGGATGATGACACAGCTAACAGACACATTCTCTCCACACATAAAGATGATAACAAGGTGGAGGCTGATCAGACAACGAGTGGCGTTTCATTGAGTGTAATAACAGAGGTGGATGGTGATGAGACAATCACGACTATGTTGGATAGTCCCTGCCAGCAAAGAGCCGATGCTCTGGAATCTCTGCTCGAATTATGTGCTCAGCTACTCAAGCAAGATAAACTTGAAGAGCTAGCTGGGGTTCTGAGACCATTTGGGAAAGAAGCTGTATCATCAAGAGAAACAGCAATATGGCTGGCAAAAAGCCTCATATCTGCCCAAAAATTTAATCCCGAAACCTAG 1887 0.4081 MEDYEVIEQIGRGAFGSAFLVLHKSEKKRYVLKKIRLAKQTEKFKRTAHQEMNLIAKLNNPYIVEYKDAWVEKEDHVCIITGYCEGGDMAENIKKARGSFFPEEKVCKWLTQLLIAVDYLHSNRVIHRDLKCSNIFLTKDNNIRLGDFGLAKRLNAEDLTSSVVGTPNYMCPELLADIPYGYKSDMWSLGCCMFEIAGHQPAFRAPDMAGLINKINRSCISPLPIVYSSTLKQLIKSMLRKNPEHRPTAAELLRHPLLQPYVLRCHNASSNILPVYPIVNSKDKTRRSNKSSGGKDHKDKEANLVNRLERIHPIEGNGDTHVSNLPSDAVTISTTADDNIETRIVDLTSFIVESSTSISGSKDGSTTSESTICSVCKEDFKSRPARETTNNEISLKSTQEFLHEEQTIAAKHFHNLEDDINAVTKEVEDDSCNEGLDNAEVLREDSNLDNSGKSTMSSAGSSSTDKDKSINEERPSLIMNPTWVEYDTESGNHLNGFTQASNMNCLTSDCNDALLVKDDDTANRHILSTHKDDNKVEADQTTSGVSLSVITEVDGDETITTMLDSPCQQRADALESLLELCAQLLKQDKLEELAGVLRPFGKEAVSSRETAIWLAKSLISAQKFNPET 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03353 628 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Spst1g03353 628 Pfam Protein kinase domain 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g03353 628 Gene3D Transferase(Phosphotransferase) domain 1 86 315 - -
Spst1g03353 628 SUPERFAMILY Protein kinase-like (PK-like) 1 289 IPR011009 -
Spst1g03353 628 FunFam serine/threonine-protein kinase Nek6 isoform X2 84 272 - -
Spst1g03353 628 MobiDBLite consensus disorder prediction 439 475 - -
Spst1g03353 628 MobiDBLite consensus disorder prediction 283 303 - -
Spst1g03353 628 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Spst1g03353 628 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g03353 628 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g03353 628 MobiDBLite consensus disorder prediction 448 465 - -
Spst1g03353 628 CDD STKc_Nek 3 258 - -
Spst1g03353 628 FunFam Serine/threonine-protein kinase Nek6 1 83 - -
Spst1g03353 628 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 579 - -
Spst1g03353 628 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03353 Spst-Chr1 42172057 42176983 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03353 4 259 MAP Kinase Kinase Kinase AT3G13530 33.074 2.88e-37 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Spst1g03353 Pkinase 1.1e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03353 K08857 - gmx:100793379 1072.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03353 1 42172057 42176983 Spst1g03353 1 42172057 42176983 ECH
Spst1g03353 1 42172057 42176983 Spst7g00289 7 2232182 2239933 PCT