Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03351 ATGGCGCAGAAGAAGAAAGCTAGGGTTTCTGACGACGAGGAAATGGAACTGCAGCATGAAGAAATCAGCCTCTACCAGGTTCTTGGTGTGGAGAGAACGGCGTCGCAGCAGGAAATAAAAAAGGCTTACTACAAGTTGGCGTTGAGGCTTCATCCTGATAAGAACCCTGGTGATGAGGGAGCTAAAGAGAAATTCCAGCAACTGCAAAAGGTGATATCGATTCTTGGGGATGAAGAGAAGCGGGCCCTCTATGATCAGACTGGATGTGTTGACGATGATGACCTGGCTGGAGATGTTGTTCAGAATCTTCAAGCATTCTTCAGAACAATGTACAAGAAGGTCACAGAAGCTGATATTGAGGAGTTTGAAGTGAACTATAGGGGATCTGTTTCTGAGAAAAATGATTTGATTGATTTGTACAAGAAGTGCAAGGGTAACATGAATAGGCTTTTTTGTTCAATGCTCTGTTCAGATCCTAAACTTGATTCACACCGATTCCAGGATATTCTCGATGAGGGTATAGCTGCTGGAGAACTAAAGGCAACAAAAGCCTACCAGAAATGGGCCAAGGAAGTATCTGAAACCAAACCGCCCACAAATCCTTTGAGGAGGGAGAAGTCTAATAAGCAGTCAGAAGCAGATCTTTATACAATGATAGCACAACGCCGAAATGAGAGGAAAGGCCAGTTTGATTCAATGTTCTCATCTCTAGTTTCAAAATATGGTGGAGGTGATATGCCCGAACCCTCTGAAGAGGAGTTTGAAGCTACGCGGAGAAAGCTGGAGACTGGTAGATCCTCTAAAAAATCAAAACAATCCAAGCGGAAGTAA 831 0.4368 MAQKKKARVSDDEEMELQHEEISLYQVLGVERTASQQEIKKAYYKLALRLHPDKNPGDEGAKEKFQQLQKVISILGDEEKRALYDQTGCVDDDDLAGDVVQNLQAFFRTMYKKVTEADIEEFEVNYRGSVSEKNDLIDLYKKCKGNMNRLFCSMLCSDPKLDSHRFQDILDEGIAAGELKATKAYQKWAKEVSETKPPTNPLRREKSNKQSEADLYTMIAQRRNERKGQFDSMFSSLVSKYGGGDMPEPSEEEFEATRRKLETGRSSKKSKQSKRK 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03351 276 CDD DnaJ 25 77 IPR001623 -
Spst1g03351 276 Pfam DnaJ domain 24 85 IPR001623 -
Spst1g03351 276 Gene3D DnaJ domain 7 100 IPR036869 -
Spst1g03351 276 MobiDBLite consensus disorder prediction 251 268 - -
Spst1g03351 276 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN-RELATED 13 272 IPR042977 -
Spst1g03351 276 SUPERFAMILY Chaperone J-domain 19 95 IPR036869 -
Spst1g03351 276 MobiDBLite consensus disorder prediction 197 211 - -
Spst1g03351 276 MobiDBLite consensus disorder prediction 238 276 - -
Spst1g03351 276 PRINTS DnaJ domain signature 80 99 IPR001623 -
Spst1g03351 276 PRINTS DnaJ domain signature 60 80 IPR001623 -
Spst1g03351 276 PRINTS DnaJ domain signature 43 58 IPR001623 -
Spst1g03351 276 PRINTS DnaJ domain signature 25 43 IPR001623 -
Spst1g03351 276 ProSiteProfiles dnaJ domain profile. 23 88 IPR001623 -
Spst1g03351 276 SMART dnaj_3 22 80 IPR001623 -
Spst1g03351 276 MobiDBLite consensus disorder prediction 190 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03351 Spst-Chr1 42155951 42157913 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03351 25 85 C2H2 Transcription Factor Family AT1G74250 39.394 2.32e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03351 K09529 - gmx:100793909 479.944
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03351 1 42155951 42157913 Spst1g03351 1 42155951 42157913 ECH
Spst1g03351 1 42155951 42157913 Spst7g00288 7 2226053 2228632 PCT