Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03349 ATGGCCACTACTACATTCTGTACATACCTACTCCTTCTCTCCGTGTCCCTTTCAATCTTCAACCTTAGTTCCTCTTCATCTGAGGGAGACATCCTTCTCTCCTTCAAGGCCTCCATTGAAGACTCTAAGAAGGCCTTGTCTAGCTGGTCCAACACTTCATCGAACCACCACTGCAACTGGACTGGAATCACATGTTCCACCTCACCTTTGCAATCAGTAACTTCTATCAACCTTCAGAGCTTAAACCTTTCCGGGGATATCTCATCTTCTATATGTGACCTTCCAAATCTGTCTTATCTCAACCTTGCTGATAACATCTTCAGCCAGCCCATCCCTCTTCACCTCTCTGAGTGTGGTTCCTTGGAGACTTTGAATCTCAGTACCAACCTCATATGGGGCACTATCCCATCTCAGATTTCTCAGTTTGCTTCCTTGAGAGTGCTTGATTTCAGCAGAAACCACATAGAAGGAAGCATCCCTGAAAGCTTAGGCTCCTTGAAGAACCTTCAAGTCCTCGACATGGGAAGCAACTTGCTTTCAGGTAGTGTACCTGCTGTCTTTAGCAATCTAACTAAACTTGAAGTACTTGATTTGTCTCAGAATCCATACTTGGTGAGTGAGATTCCAGAGGATATCGGTGAGCTTGACAATCTAAAGCAACTTCTGTTGCAAAGCTCTTCTTTTCAAGGGAAAATTCCAGATTCTCTGGTGGGCCTGGTCAGCTTGACTCATTTAGATCTCTCTGAGAACAACCTAACAGGTGGTGTTCCTCAGGCTCTACCGTCTTCTCTCAAGAACCTGGTTTCGTTTGATGTTTCACAAAACAAGCTTTTGGGGCCATTTCCAAATGGCATCTGCAAAGGACAAAACCTTATAAACCTCGGTCTCCACACAAATGCCTTCAATGGTTCAATACCTAACTCCATTGGTGAATGTAAGAGTCTTGAGAGATTCCAAGTCCAGAACAATGCCTTCTCTGGAGATTTCCCCATTGCATTGTGGTCATTACCCAAAATTAAGCTCATTAGAGCTGAAAACAACAGATTCTCAGGACAGATACCGGAGTCAATTTCAGGAGCTGTTCAGTTGGAGCAAGTTCAGCTTGACAACAACAGCTTTGCTGGTAAAATTCCTATAGGTCTTGGCGTTGTCAAGAGCTTATACAGATTTTCTGCTTCTCTCAACCGTTTCTATGGTGAACTTCCTCCAAACTTCTGTGACTCTCCTGTTATGAGCATAGTAAATCTCTCCCACAATTCTCTTTCTGGTCAAATCCCAGCGCTGAGAAAATGCAGGAAACTAGTTTCATTGTCGCTGGCTGATAACAGTCTAACCGGAGAAATTCCCCCTTCTCTTGCTGAGCTACCTGTGCTCACTTACCTTGACCTTTCAGACAACAATCTCACTGGTTCAATCCCACAAGGGCTTCAGAACTTGAAGCTTGCTCTTTTCAATGTGTCCTTCAATCAGCTATCAGGTAATGTGCCATACTCCTTGATTTCTGGTCTCCCTGCATCATTTTTGGACGGAAACCCTAGTCTTTGTGGCCCTGGATTGCCTAACTCTTGTTCTGATGACATGCCAAGACACCACATTGGTAGCCTTACGACCTTAGCATGTGCCCTCATCTCTTTAGCCTTTGTAGCTGGAACTTCCATTGTTGTTGGCGGGTTTATTTTGTATAGGAGATATTGCAAAGGGAATCAAGTAGGGGTTTGGCGCTCAGTGTTCTTCTATCCTCTCAGGATTACTGAACATGATCTACTTGTAGCTATGAATGAGAAAAGCTCAATGGGAAATGGTGGGTTTTTTGGTAGAGTTTATGTTGTGAGTTTACCTAGTGGTGAACGAATAGCTGTGAAGAAGTTAGTCAATTTTGGAAACCAGTCCTCGAAAAGTTTGAAAGCGGAGGTGAAAACTTTGGCAAAAATTAGGCATAAGAATGTTGTTAAAATTCTGGGTTTTTGCCACTCCGATGAGTCAGTGTTTCTCATTTATGAGTACTTGAATGGAGGGAGCTTAGGGGATTTGATTTCTCGTCAGAATTTTCAGCTACAGTGGGGAGTTCGATTAAGAATTGCCATTGGAGTTGCTCAAGGACTGGCATATCTTCACAAGGATTATGTCCCTCACCTGCTTCATAGAAATGTCAAGTCAAGTAACATTTTGTTGGATGAAAACTTTGAGCCAAAACTCACAGATTTTGCTCTTGATCGAGTCGTTGGAGAAGCTTCATTTCAATCAATTTTGAACACTGAAGCATCATCTTCATGTTACATTGCACCAGAAAATGGTTACAGTAAGAAAGCAACTGAACAATTAGACACCTACAGCTTTGGTGTGGTATTGCTGGAGCTAGTGAGTGGTAGGCAAGCAGAGCAAACAGAGTCAAGTGACTCACTTGACATTGTGAAGTGGGTTAGAAGGAAAGTGAACATCACTAATGGGGTGCATCAAGTTCTTGACCCACGGATATCAAGCACTTCTCACCAAGAGATGATTGGAGTGTTAGATATTGCACTTCGTTGCACTTCTGTGGTGCCTGAGAAAAGGCCATCTATGGTAGAAGTTATTAGAAGCCTTCAATCCCTGGAGTCAAGAACTTGCATTGAAAATTTGCATGAACCAAATGCAGAACCCTCAGTTCCAGTCTGA 2655 0.4309 MATTTFCTYLLLLSVSLSIFNLSSSSSEGDILLSFKASIEDSKKALSSWSNTSSNHHCNWTGITCSTSPLQSVTSINLQSLNLSGDISSSICDLPNLSYLNLADNIFSQPIPLHLSECGSLETLNLSTNLIWGTIPSQISQFASLRVLDFSRNHIEGSIPESLGSLKNLQVLDMGSNLLSGSVPAVFSNLTKLEVLDLSQNPYLVSEIPEDIGELDNLKQLLLQSSSFQGKIPDSLVGLVSLTHLDLSENNLTGGVPQALPSSLKNLVSFDVSQNKLLGPFPNGICKGQNLINLGLHTNAFNGSIPNSIGECKSLERFQVQNNAFSGDFPIALWSLPKIKLIRAENNRFSGQIPESISGAVQLEQVQLDNNSFAGKIPIGLGVVKSLYRFSASLNRFYGELPPNFCDSPVMSIVNLSHNSLSGQIPALRKCRKLVSLSLADNSLTGEIPPSLAELPVLTYLDLSDNNLTGSIPQGLQNLKLALFNVSFNQLSGNVPYSLISGLPASFLDGNPSLCGPGLPNSCSDDMPRHHIGSLTTLACALISLAFVAGTSIVVGGFILYRRYCKGNQVGVWRSVFFYPLRITEHDLLVAMNEKSSMGNGGFFGRVYVVSLPSGERIAVKKLVNFGNQSSKSLKAEVKTLAKIRHKNVVKILGFCHSDESVFLIYEYLNGGSLGDLISRQNFQLQWGVRLRIAIGVAQGLAYLHKDYVPHLLHRNVKSSNILLDENFEPKLTDFALDRVVGEASFQSILNTEASSSCYIAPENGYSKKATEQLDTYSFGVVLLELVSGRQAEQTESSDSLDIVKWVRRKVNITNGVHQVLDPRISSTSHQEMIGVLDIALRCTSVVPEKRPSMVEVIRSLQSLESRTCIENLHEPNAEPSVPV 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03349 884 Gene3D Ribonuclease Inhibitor 24 205 IPR032675 -
Spst1g03349 884 SMART LRR_typ_2 166 189 IPR003591 -
Spst1g03349 884 SMART LRR_typ_2 264 288 IPR003591 -
Spst1g03349 884 SMART LRR_typ_2 190 215 IPR003591 -
Spst1g03349 884 SMART LRR_typ_2 455 478 IPR003591 -
Spst1g03349 884 SMART LRR_typ_2 239 262 IPR003591 -
Spst1g03349 884 SMART LRR_typ_2 142 165 IPR003591 -
Spst1g03349 884 Pfam Leucine rich repeat 144 202 IPR001611 GO:0005515
Spst1g03349 884 Pfam Leucine rich repeat 432 491 IPR001611 GO:0005515
Spst1g03349 884 SUPERFAMILY Protein kinase-like (PK-like) 601 867 IPR011009 -
Spst1g03349 884 SUPERFAMILY L domain-like 206 520 - -
Spst1g03349 884 SUPERFAMILY L domain-like 26 300 - -
Spst1g03349 884 ProSiteProfiles Protein kinase domain profile. 593 864 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g03349 884 FunFam probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 583 668 - -
Spst1g03349 884 Gene3D Ribonuclease Inhibitor 206 261 IPR032675 -
Spst1g03349 884 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 262 526 - -
Spst1g03349 884 Gene3D Phosphorylase Kinase; domain 1 582 668 - -
Spst1g03349 884 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 669 869 - -
Spst1g03349 884 Pfam Protein kinase domain 594 859 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g03349 884 Gene3D Transferase(Phosphotransferase) domain 1 669 877 - -
Spst1g03349 884 Gene3D Ribonuclease Inhibitor 262 526 IPR032675 -
Spst1g03349 884 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 11 863 - -
Spst1g03349 884 Pfam Leucine rich repeat N-terminal domain 26 66 IPR013210 -
Spst1g03349 884 PRINTS Leucine-rich repeat signature 242 255 - -
Spst1g03349 884 PRINTS Leucine-rich repeat signature 455 468 - -
Spst1g03349 884 ProSiteProfiles Leucine-rich repeat profile. 457 480 IPR001611 GO:0005515
Spst1g03349 884 FunFam Leucine-rich repeat family protein 27 184 - -
Spst1g03349 884 Pfam Leucine Rich Repeat 241 266 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03349 Spst-Chr1 42135099 42138282 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03349 32 864 Receptor kinase-like Gene Family AT5G06940 65.274 0.0 1082
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Spst1g03349 Pkinase 4.1e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03349 - - gmx:100794428 1568.9