Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03348 ATGGAAGAATCGTACTCTATGCTTGAGGATGCAAGAAATATGGAACCAATCATGTTCACCACTCAAGAAAGCACCCCAAGAAATTGGAATGAAGAACCAATAATACCCGATCAACACCTTGTGACTCCAATTGGAAGTACTTCTCAAGGGTCAATGAACAATTCAACCTGTAGTTCATCCCACCAATATGATGTGTTATCCCTGTTAGAGGGAATAGTTAACGAAAAACACATAGAAGAAACCCTAATCCAATCCAAGCTATTGTCGTGCAACTTTGCGTCCATTGCAGCAACAGCAACAGCAACAGCAACCAGGATTTTCAATGAGAGGGAACGAAATGATTGTGGAGAGAATGATCGCAGACAGCATGACGCGTATCGTGATTTGGTTGCAAAAACAATTGGTAGCAAGAGCTCTGTGTATCGAGGAGTAATCAAGTGCAACGATGAGCGTTTCGAAGCATTTGTGTGGGATAACACAGATCCAGGGGAAAGAGGAAGAACAGGTGCTTATTCAACTGAAGTTGACGCCGCCAAAGCTCATGATTTAGTGGCAATCAGAATAGGGGGCTTAAAAGCATTGACGAATTTTCATATGAGATGCTATTCGACGGACATGGATGAAATGCGCAGAATGAACAAATGGGACTATATTTGTGCTGTTAGAAGGTTGGGCAAGGGCTATACAGACGGTGGTGATTCCCCTTTCCGTGGCGTCTACAGAAACAGGGTTCCGACAAGCAGGAAATGGGAAGCGAGGCTCGGTCGTGAGGGGTCACCAACCATACACTTGGGAACTTATTACACTGCAGAGGATGCAGCGAGAGCTTATGATATTATATCAATAAAACTGAAGGGAGGGGATGCAATTACCAACTTTGACTCGAAATCCTATGAAACTGAGGGCATAATGGAGAGTGTGATTACTCAAGCAACCGATGGATCGATTATTCTGCAGAAAGAAAAAAGCAATAAAGAAACCGAAGCATCTCCTCAAACCAGCTCCGTAGTCCAACACCATCCTCAACCACCGAGTGTCCCATCCATTTGTCGTTGCTGCCACAATCAAATTCCACCAAGCAGCCCTTATGCTCTTGGTGGAATTACAGGTGGAGCTGCAAACAGTGGAAGTGAAAATTCAATTGGTAACGATGCTGCACAGATTGCACAGTTTCCCAATGAGAGTGCAACACTGCAACAGCCACTTCAGACGCCGAGGCAAGTGAGTTTTAACAATTGCTTTGATCAGAATTTTGTCATCAACAACAACCAGTTTCCAAATCATAATGCAACACAGCAACTGTCACTTCTGACTCCGAGGCAGGTGAGTTTTAGCAGTAGCTTTAATCAGAACCTTGTCAACAACTACAACAACAATAACCAGTTTCTGCCTCAGAGTTCTAACCTTGCATTGCCTGCTCCTGGCACCCAAAATCTAGACTTAGAAAGGTGTGTCCGTTTCCCTGATTGGCGATCAGGTTTTGGAAAGAAGTTACTAGGGGGTGGCTTGGAATTGGAACCTTTGAGCAATATTGCTGCCCTCAATGTGCAACCTCTACCACAAGTCTCGCTGAATGAAAGTACAGGAGCAACACAGCTACACTCACCTGCATTGCACCAAAGTTATGAGCATCAGAACTTGAACTCCTGCTTCTCTGATAGTTTTCAGAACCCTATTTCTGAACCAAACAACAACGGCTTCCAAAGTCAAGCCACTGGAAGTCAAATCGATTTGGACGTGAGAGATTATCTCAACAGATCTTACATAGAAGACACCGACTTCCAATGTGATTATGACCTGTTTTCAGCACTGAATGGGGGTAGATAA 1827 0.4406 MEESYSMLEDARNMEPIMFTTQESTPRNWNEEPIIPDQHLVTPIGSTSQGSMNNSTCSSSHQYDVLSLLEGIVNEKHIEETLIQSKLLSCNFASIAATATATATRIFNERERNDCGENDRRQHDAYRDLVAKTIGSKSSVYRGVIKCNDERFEAFVWDNTDPGERGRTGAYSTEVDAAKAHDLVAIRIGGLKALTNFHMRCYSTDMDEMRRMNKWDYICAVRRLGKGYTDGGDSPFRGVYRNRVPTSRKWEARLGREGSPTIHLGTYYTAEDAARAYDIISIKLKGGDAITNFDSKSYETEGIMESVITQATDGSIILQKEKSNKETEASPQTSSVVQHHPQPPSVPSICRCCHNQIPPSSPYALGGITGGAANSGSENSIGNDAAQIAQFPNESATLQQPLQTPRQVSFNNCFDQNFVINNNQFPNHNATQQLSLLTPRQVSFSSSFNQNLVNNYNNNNQFLPQSSNLALPAPGTQNLDLERCVRFPDWRSGFGKKLLGGGLELEPLSNIAALNVQPLPQVSLNESTGATQLHSPALHQSYEHQNLNSCFSDSFQNPISEPNNNGFQSQATGSQIDLDVRDYLNRSYIEDTDFQCDYDLFSALNGGR 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03348 608 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 104 389 - -
Spst1g03348 608 SMART rav1_2 235 300 IPR001471 GO:0003700|GO:0006355
Spst1g03348 608 SMART rav1_2 140 204 IPR001471 GO:0003700|GO:0006355
Spst1g03348 608 ProSiteProfiles AP2/ERF domain profile. 235 294 IPR001471 GO:0003700|GO:0006355
Spst1g03348 608 SUPERFAMILY DNA-binding domain 235 294 IPR016177 GO:0003677
Spst1g03348 608 MobiDBLite consensus disorder prediction 328 342 - -
Spst1g03348 608 CDD AP2 236 294 IPR001471 GO:0003700|GO:0006355
Spst1g03348 608 ProSiteProfiles AP2/ERF domain profile. 140 198 IPR001471 GO:0003700|GO:0006355
Spst1g03348 608 MobiDBLite consensus disorder prediction 322 342 - -
Spst1g03348 608 SUPERFAMILY DNA-binding domain 139 199 IPR016177 GO:0003677
Spst1g03348 608 Gene3D AP2/ERF domain 235 295 IPR036955 GO:0003700|GO:0006355
Spst1g03348 608 Gene3D AP2/ERF domain 140 200 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03348 Spst-Chr1 42120241 42123277 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03348 132 306 AP2-EREBP Transcription Factor Family AT1G51190 37.500 1.12e-32 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03348 - K09285 pvu:PHAVU_001G137500g 895.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03348 1 42120241 42123277 Spst1g03348 1 42120241 42123277 ECH