Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03342 ATGGCTAGAACCGTACGCTTTAGAACTCGTATAATTAACACAATTCGAGGTGAATCCGGTTCAATTGGAACTTCTACTCTTCGTTTTGTTCGCTCAATGGACCAAGCTCCGGTAGGATTGCGCGGATCCGTGCACGACGGCGCCACACTCGAGTCCATTCAATTCAACGAAGAAATTCAGGGAATCGTGGCGTCGGCGCCGGAAAACGCCAGCTCGTTCACCGCGCTGCTTGAGCTCCCGCCGACGCAGGCGGTGGAGCTCCTTCACTCGCCGGACTCTGACGGGGCTCGTAAACAACCTAATTGCCACGTCAGCGCGAATCACAAACCCTATTTGCTCCACTCTTTCGGTGGCAATTTGACTTTTCCTTCCAACGCCGCCTTAATTGAACGCGCCGCCAAGTTCTCCGTGTTCGCTGGTGAAAACTCGCCTTCGCAGGGGGAGGCGCGTCTGCTTCCGGCCGGGTCTGGTTCGAATTTGGATAGGGTGAAGAACGAGCCGCAAGAGACTGATTCGAACCCGTGCTCCACGCAAGGGTGCGTTTCGGATCCCGCGGTTGAGAACAAGAACGAAAGAACTGCGAAGAGAAAGGAGCGAGAGAAGAAGGTTAAAGGGTCGTCGAAGAAGAGTAAGAGCGTCGCCGATGAGACATCCGGCGACGGTGAGAAGCTTCCCTACGTCCACGTCCGAGTTCGTCGAGGTCAAGCCACAGATAGCCATAGCTTGGCAGAAAGGGCTAGGAGAGAGAAGATCAACGCTCGCATGAAGCTTTTGCAAGAGCTGGTCCCAGGCTGCGACAAGGATGTGATTATTTTGTACTTTCGGGTGATATCAGGAACGGCAATGGTTCTAGATGAAATCATCAACCATGTGCAATCTCTACAACGACAAGTGGAGATTTTATCTATGAAACTGGCTGCAGTTAACCCAAGAATTGATTTCAGCCTTGACAGCTTATTGGCGACTGATGGGACATCTCTAATGGATAGTAACATACCTAGCATGGTGACACCTCTTATGTGGCCAGAAATTCCTGTCAATGCTAACCGGCAACATTATCAACAACAGTGGCAATTTGATGCATTCCACCAACCGCTATGGGAGAGGGATGAAGTCAACCATAATTTCATGACTCCCGAAAACTCACTTTTGAGTTATGATTCGTCGGCAAACTCAGCGTCTCTGCACTCAAATCAATTGAAGATGGAACTCTGA 1215 0.5062 MARTVRFRTRIINTIRGESGSIGTSTLRFVRSMDQAPVGLRGSVHDGATLESIQFNEEIQGIVASAPENASSFTALLELPPTQAVELLHSPDSDGARKQPNCHVSANHKPYLLHSFGGNLTFPSNAALIERAAKFSVFAGENSPSQGEARLLPAGSGSNLDRVKNEPQETDSNPCSTQGCVSDPAVENKNERTAKRKEREKKVKGSSKKSKSVADETSGDGEKLPYVHVRVRRGQATDSHSLAERARREKINARMKLLQELVPGCDKDVIILYFRVISGTAMVLDEIINHVQSLQRQVEILSMKLAAVNPRIDFSLDSLLATDGTSLMDSNIPSMVTPLMWPEIPVNANRQHYQQQWQFDAFHQPLWERDEVNHNFMTPENSLLSYDSSANSASLHSNQLKMEL 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03342 404 MobiDBLite consensus disorder prediction 188 224 - -
Spst1g03342 404 Coils Coil 284 304 - -
Spst1g03342 404 Pfam Helix-loop-helix DNA-binding domain 239 265 IPR011598 GO:0046983
Spst1g03342 404 SMART finulus 241 300 IPR011598 GO:0046983
Spst1g03342 404 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 233 313 IPR036638 GO:0046983
Spst1g03342 404 MobiDBLite consensus disorder prediction 141 224 - -
Spst1g03342 404 CDD bHLH_AtBPE_like 225 319 - -
Spst1g03342 404 Gene3D - 232 313 IPR036638 GO:0046983
Spst1g03342 404 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 235 294 IPR011598 GO:0046983
Spst1g03342 404 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 136 388 IPR024097 GO:0006355
Spst1g03342 404 MobiDBLite consensus disorder prediction 169 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03342 Spst-Chr1 42042451 42050573 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03342 39 404 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G57800 52.551 1.28e-107 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst1g03342 HLH 0.0001 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03342 - - vun:114168708 625.165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03342 1 42042451 42050573 Spst1g03342 1 42042451 42050573 ECH
Spst1g03342 1 42042451 42050573 Spst7g00280 7 2166243 2178211 PCT