Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03340 ATGTCATTGCATCATCTTCTCATTTCACTCTTTCTCTTCTTCATGGTTACTCCAACCACCTCTTTAAACTCTGACGGCCTCTCCCTGCTGGCCCTGAAAGCTGCTGTGGACTCCGACCCCACCGGCGTTCTCACGTCCTGGTCGGAAACCGACGCCACAGCATGCCACTGGCCCGGTGTGTCCTGCACGGGCGACAGAGTTACCCAACTCTCTCTCCCCAACAAGAACCTCACCGGTTATATTCCCTCCGAACTGGGATTTCTCACCTCCCTCAAAAGATTAAGTCTTCCATACAACAACTTCTCCAACGCCATTCCTCCCTCTCTATTCAATGCGACCTCCCTCATTGTCCTCGACCTCTCTCACAACGCTCTCGGAGGTTCCCTTCCCTCGCACTTTCTCTCCCTCAAGTTCCTTCGCCATTTGGACCTCTCCTCCAACTCCTTCAACGGTTCCCTCCCTCCTACCCTCTCCGATCTCACTTCTCTCACCGGAACCCTCAATCTCTCTTTCAACCACTTCTCCGGCGGGATTCCGGCCTCCCTTGCTCACCTCCCTGTGGCTGTCAGCCTCGACCTCCGCAACAACAACCTCACAGGAAAAATCCCTCAGGTGGGGTCCCTGCTAAACCAGGGTCCCACCGCGTTTTCTGGCAACCCTGGACTCTGTGGGTTCCCCTTACAAACCGCGTGCTCCGAAGCGCAAAAGCCTGGGATTTTCGCCAACCCTGAAGAGGGTTTCCCTCAGAACCCCAATGCGCTTCACCCTGAAGGCTCCGACCAGAGAGTGAAATCGCACGGTGGCGGCTCCGTCGCAGTTCTTGTCATCTCCGGGCTCTCCGTCGCCGTTGGAGCGGTTTCTCTCTCACTCTGGGTTTTCCGGCGACGGTGGGGCGGGGAGGAGGGGAAATTGGGGGGGCAGAAATTGGACAATGAGGTGGACGCGGGAGAGGGGCAAGAAGGTAAATTTGTTGTGGTGGATGAAGGGTTTGAGTTGGAGTTGGAGGATTTGCTTAGGGCGTCTGCGTATGTTGTGGGGAAGAGTAGGAGTGGGATAGTGTACAAGGTTGTCGGCGTCGGGAGAGGGTCTTCCTCGGCGGGGAATGTGGTGGCTGTTCGGCGACTCAGTGAGGGTGACGCCACGTGGCGATTTAAGGAGTTTGAGTCTGAAGTGGAGGCCATTGCAAAGGTTCGTCACCCCAGTGTTGTTCCCTTGAGAGCTTATTATTATGCGCATGATGAGAAGCTGCTTATCACTGATTTCATTCGCAATGGAAGCTTGCACACTGCTTTACATGGTGGGCCTTCCAATTCATCGCCACCATTATCATGGGCATCAAGGTTAAAAATTGCTCAAGAAGCAGCCAGGGGCTTGATGTATATACACGAGTTCAGTGGTCGCAAATATATCCATGGCAACATGAAGTCAACAAAAATCTTACTAGACGATGAGCTCCATCCATACGTGTCAGGTTTCGGGCTCACCCGGCTTGGTTTGGGCACGCCTACTACAGTGGCTCCAAAACGCAACAGCTTGAACCAATCTTCTGTAACCACTTCAATGAGTTCAAAGGTTGCAGCTTCCATTAACCACTACCTGGCACCTGAGGTGCGCATGGCTGGTGGCAAGTTCACTCAGAAATGTGATGTATATTCTTTTGGCATAGTGCTTTTGGAACTTTTGACGGGTAGGATGCCAGATTTTGGGGCAGAAAATGATGACAAGGTGCTGGAGAGTTTTGTGAGGAAAGCGTTCAGGGAGGAGCAGCCATTGTCTGATATCATTGACCAAGCACTCATCCCTGAAGTTTATGCTAAAAAGCAAGTCATTTCTGCATTCCATATTGCTCTGAACTGCACTGAACTCGATCCAGAGTTGCGACCTAGAATGAAAACCGTGTCAGATAGTCTTGATCACATCAAATATAGTGAAAAACAAGAGAACCATGTATAG 1953 0.5182 MSLHHLLISLFLFFMVTPTTSLNSDGLSLLALKAAVDSDPTGVLTSWSETDATACHWPGVSCTGDRVTQLSLPNKNLTGYIPSELGFLTSLKRLSLPYNNFSNAIPPSLFNATSLIVLDLSHNALGGSLPSHFLSLKFLRHLDLSSNSFNGSLPPTLSDLTSLTGTLNLSFNHFSGGIPASLAHLPVAVSLDLRNNNLTGKIPQVGSLLNQGPTAFSGNPGLCGFPLQTACSEAQKPGIFANPEEGFPQNPNALHPEGSDQRVKSHGGGSVAVLVISGLSVAVGAVSLSLWVFRRRWGGEEGKLGGQKLDNEVDAGEGQEGKFVVVDEGFELELEDLLRASAYVVGKSRSGIVYKVVGVGRGSSSAGNVVAVRRLSEGDATWRFKEFESEVEAIAKVRHPSVVPLRAYYYAHDEKLLITDFIRNGSLHTALHGGPSNSSPPLSWASRLKIAQEAARGLMYIHEFSGRKYIHGNMKSTKILLDDELHPYVSGFGLTRLGLGTPTTVAPKRNSLNQSSVTTSMSSKVAASINHYLAPEVRMAGGKFTQKCDVYSFGIVLLELLTGRMPDFGAENDDKVLESFVRKAFREEQPLSDIIDQALIPEVYAKKQVISAFHIALNCTELDPELRPRMKTVSDSLDHIKYSEKQENHV 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03340 650 Gene3D Phosphorylase Kinase; domain 1 321 421 - -
Spst1g03340 650 Gene3D Transferase(Phosphotransferase) domain 1 422 650 - -
Spst1g03340 650 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 10 644 IPR046959 -
Spst1g03340 650 SUPERFAMILY L domain-like 25 228 - -
Spst1g03340 650 FunFam Leucine-rich repeat receptor-like protein kinase 140 233 - -
Spst1g03340 650 Pfam Leucine rich repeat N-terminal domain 23 62 IPR013210 -
Spst1g03340 650 ProSiteProfiles Protein kinase domain profile. 339 642 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g03340 650 SUPERFAMILY Protein kinase-like (PK-like) 344 637 IPR011009 -
Spst1g03340 650 Gene3D Ribonuclease Inhibitor 27 137 IPR032675 -
Spst1g03340 650 Pfam Protein tyrosine and serine/threonine kinase 345 635 IPR001245 GO:0004672|GO:0006468
Spst1g03340 650 MobiDBLite consensus disorder prediction 242 262 - -
Spst1g03340 650 Pfam Leucine rich repeat 90 148 IPR001611 GO:0005515
Spst1g03340 650 FunFam Leucine-rich repeat receptor-like kinase 27 139 - -
Spst1g03340 650 Gene3D Ribonuclease Inhibitor 138 233 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03340 Spst-Chr1 42007089 42010420 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03340 22 641 Receptor kinase-like Gene Family AT3G57830 58.464 0.0 716
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Spst1g03340 PK_Tyr_Ser-Thr 7.4e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03340 - - gmx:100796011 1077