Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03338 ATGGATTCCAATTCCCGTTACCAAGTTCAGCAACAACACCAACAACCCAATTCTGGGTTACTTCGCTTTCGCTCTGCCCCCACTCAGGTTCTCGCGAATTTCAAACAAGGCGAAGCTTCCATTAACGGGAACCCCTGGGAGGGTTCTGAACCACTTTTTAGATTTTTTAATTCCGGGGACACCCTCGATACTACGTCGCCTGCCTTACGAGAATTCGTGGATAACAAGGCTTCTAATGATAATAAACAAGCGAAGGAGTCAACAATATCATCATCGTCATCGTTATCACCTCTGAGTCGCATGAATTCGCAGCAAGGCTATAGTACTTCTGTGTTACCGGCTCGGTACCCGAGGCATGACTCTGGTGTAACTGTTACTTCATCTATGATGGTGGGTTCTATGGGAATGGATCAGAGTGTAAAAAGCTTTAATTCCAATCTTCTCAGGCAGAGTAGCTTCCCTGCTGGCAATTTCTCTAACAACATCTCCTTTCAGAACGAGTATGATGCTATGAAAGGTGTTGAAAATTTTGGTGGGGTTAATGGCAATGATGGTGAGCTTAGTCTATCTATGAACAGAATGAAGAATCACATTAACTTCTCACCAAGAAGTCCTTCTTCCATTGGAATGTTGTCACCAACCTCCAAGATGGGCATGGAGGGTCTTAGGGTAACCAGCCCTAAGGATGGTAGACAGGGAGGTAGCAATGGTGATGCTCGATATTATGGTCCTGGATTCCCTTATGCTTCTTGGAACGAGACGTCACACCCCAAAAGACAGCGAAACAGTAACGATGAGTTACTTTCTGAAGCTCAGAATGGAGAGGTGGGAAATCAAGTTCATACACTTTCGCATCATTTGAGTTTGCCAAGAACGTCCTCGGAGATGTTTGCTATGGATAATTTGCTTCAGTTCAATGATTCTGTTCCTTGTAAAATCAGAGCAAAAAGAGGCTTTGCTACTCATCCTCGAAGCATTGCCGAAAGGGTGAGAAGAACTAGGATCAGTGAACGAATAAGAAAATTGCAAGAGCTTGTTCCAAACATGGAAAAGCAAACCAGCACAGCAGAGATGTTAGACTTGGCTGTAGACTACATAAAAAATCTTCAGAATCAATTCAAGACTCTGAGCGAAAGACGGGCTAAATGCAAATGTAAAAACATGCAGAAATCAGAAACAGATCAAATTGCTTGA 1194 0.433 MDSNSRYQVQQQHQQPNSGLLRFRSAPTQVLANFKQGEASINGNPWEGSEPLFRFFNSGDTLDTTSPALREFVDNKASNDNKQAKESTISSSSSLSPLSRMNSQQGYSTSVLPARYPRHDSGVTVTSSMMVGSMGMDQSVKSFNSNLLRQSSFPAGNFSNNISFQNEYDAMKGVENFGGVNGNDGELSLSMNRMKNHINFSPRSPSSIGMLSPTSKMGMEGLRVTSPKDGRQGGSNGDARYYGPGFPYASWNETSHPKRQRNSNDELLSEAQNGEVGNQVHTLSHHLSLPRTSSEMFAMDNLLQFNDSVPCKIRAKRGFATHPRSIAERVRRTRISERIRKLQELVPNMEKQTSTAEMLDLAVDYIKNLQNQFKTLSERRAKCKCKNMQKSETDQIA 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03338 397 MobiDBLite consensus disorder prediction 82 111 - -
Spst1g03338 397 MobiDBLite consensus disorder prediction 1 20 - -
Spst1g03338 397 MobiDBLite consensus disorder prediction 75 117 - -
Spst1g03338 397 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 319 369 IPR011598 GO:0046983
Spst1g03338 397 Pfam Helix-loop-helix DNA-binding domain 325 370 IPR011598 GO:0046983
Spst1g03338 397 SMART finulus 325 375 IPR011598 GO:0046983
Spst1g03338 397 Coils Coil 366 386 - -
Spst1g03338 397 Gene3D - 321 395 IPR036638 GO:0046983
Spst1g03338 397 Coils Coil 332 352 - -
Spst1g03338 397 FunFam Transcription factor bHLH130 family 320 390 - -
Spst1g03338 397 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 322 387 IPR036638 GO:0046983
Spst1g03338 397 CDD bHLH_AtbHLH_like 324 377 IPR045239 -
Spst1g03338 397 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 83 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03338 Spst-Chr1 41998832 42001273 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03338 18 375 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 42.553 3.07e-71 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst1g03338 HLH 3.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03338 - - gmx:100814652 599.356
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03338 1 41998832 42001273 Spst1g03338 1 41998832 42001273 ECH
Spst1g03338 1 41998832 42001273 Spst10g01727 10 17685845 17692100 ECH
Spst1g03338 1 41998832 42001273 Spst7g00278 7 2134637 2137260 PCT