Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03323 ATGGGTCCCCCAAGCAACCTCCTATCTCTTTTAGTTGCTCTGGCCGCAGTTTTTGCATCTTTGTATCTCATAAATCCAATTCCACAGTTTCTCAACAACTTCACCTATTTCACCCTCACAGCCTTGTCACCTGCATCTGCATACTTGGCGAAACCTTTAACATGGAACTTCCACAGACATCACAAGAAGTACCCTGATAATGGGAATACCGATTCTATTTGTGATGATTTTCCACCAGGAACTCCACCTCCAGATACCAATACCACTTCGTATCTTTGTGTTGATCGAAAAGGGTGTTGTAATTTCACAACAGTACAAGCAGCCGTGAATGCAGTTCCAAATTTGAGTGTCCAAAGAACCATAATATGGATAAACAGTGGCATGTACTATGAGAAGGTTATTGTGCCCAAAACCAAACCCAACATTACATTTCAAGGACAAGGCTATACTTCAACTGCAATTGCATGGAATGACACCGCATTATCCGCGAATGGAACATTTTATAGTGCTTCTGTACAAGTTTTTGCCTCCAATTTCATTGCTAAGAACATAAGCTTCATGAATCTAGCACCAATGCCAAGTCCTGGGGCAGTAGGGGCACAAGCAGTAGCTATTAGAGTATCGGGAGATCAATCTGAATTTAGGGGTTGTGGATTCTTTGGAGCACAAGACACCCTTCACGACGATAAGGGTCGCCATTACTTCAAAGATTGCTATATTCAAGGCTCCATTGACTTCATATTCGGCAATGCAAGGTCACTCTACGAGAATTGTCAAATAGTTTCTATAGCGAACCCCGTACCAGTGGGACAAAAGAGCATAAATGGCGCTGTTACAGCTCATGGTCGAGTTTCAGGTGATGAAAATACAGGGTTTGCATTTGTGAACAGTACAATTGGTGGAAATGGTAGAATATGGTTGGGTCGAGCATGGAGACCTTATTCTCGTGTTGTCTTTGCCTTCACATTAATGTCAGATATTATTGCCCCTGAAGGTTGGAATGATTTCAACGACCCTTCAAGAGACCAGACTATCTTCTATGGAGAATATAATTGCTCAGGGCCAGGGGCTAATACCAACTTGAGGGCACCTTATGTACAGAAATTAAATGATACACAAGTTTTGGCTTTCATCAACACTACCTTTATTGATGGTGACCAATGGTTGGAAACTTCCAAATAA 1182 0.4196 MGPPSNLLSLLVALAAVFASLYLINPIPQFLNNFTYFTLTALSPASAYLAKPLTWNFHRHHKKYPDNGNTDSICDDFPPGTPPPDTNTTSYLCVDRKGCCNFTTVQAAVNAVPNLSVQRTIIWINSGMYYEKVIVPKTKPNITFQGQGYTSTAIAWNDTALSANGTFYSASVQVFASNFIAKNISFMNLAPMPSPGAVGAQAVAIRVSGDQSEFRGCGFFGAQDTLHDDKGRHYFKDCYIQGSIDFIFGNARSLYENCQIVSIANPVPVGQKSINGAVTAHGRVSGDENTGFAFVNSTIGGNGRIWLGRAWRPYSRVVFAFTLMSDIIAPEGWNDFNDPSRDQTIFYGEYNCSGPGANTNLRAPYVQKLNDTQVLAFINTTFIDGDQWLETSK 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03323 393 Gene3D - 85 393 IPR012334 -
Spst1g03323 393 FunFam Pectinesterase 86 393 - -
Spst1g03323 393 Pfam Pectinesterase 94 386 IPR000070 GO:0030599|GO:0042545
Spst1g03323 393 SUPERFAMILY Pectin lyase-like 91 390 IPR011050 -
Spst1g03323 393 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 80 390 - -
Spst1g03323 393 ProSitePatterns Pectinesterase signature 2. 240 249 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03323 Spst-Chr1 41830376 41832200 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03323 63 392 Carbohydrate Esterase AT1G05310 74.545 0.0 533
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03323 - - gmx:100806629 734.176