Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03320 ATGTTTCGCCACTTCTTCTATGTGCATCTTAATCTCTTTGTACTATCATTTTTGGTTTCTCAGGGCTTGGCGTTCACGCATCCACACGAAGTGTCAGCTCTCCAGGATCTATATAGGACCTTTAACTATCCACCAGTGCTCAAAGGATGGAATGGTAGCGATCCTTGTGGAGAGTCTTGGACAGGAGTTGCTTGTTCTGGGCCATCAGTTATACAGCTAAAACTTCAAGGATTAAACCTCAGTGGGTATATTGGAAGCCTGCTATATAATATACCCAACTTGAAGCAACTTGATGTCAGTTCAAATAACATAGAGGGCGAAATACCATTCGGTTTACCCCCCAATGTCACATATATGAATTTAAGCCACAATTTACTACATGGACCCATTGGTGATGTATTTACGGGTTTAGATAATCTCAAAGAAATGTATGTCCTCTATTCCTGGTCTTACCTACCTTTGGATATGTACAAAATGAATAAGCAATTCAACAACAATCAAATTTCAGGAGATCTACCGTATTCATTTGGTTCCTTAAGAAACCTTGCCAGATTGTTCCTCCAGAATAACAGGTTCACCGGATCAGTCGCTTACTTGGCTGAACTTCCACTGACAGATTTGAACATTCAAGGTAATCTGTTTAGTGGCCTTCTTCCGCAGCATTTTCAATCTATACTGAATTTATGGATTGGAGAGAATAAATTCCATGTGGCCGACAACTCTCCTCCCTGGACATTTCCTCTGGATACTGTATCAGTTGAGCAGAACACTAGTAGCCCACCCACAACTCAGGCAAATGCCATAAAGAATTATTCTCCTCCCAGAGTAAGTGAGGCTCCTCCCGGAGTTAATGAGGCTCATCCCAGGGTAAATGAGGCTCCTCCCAGAGTAAGTGAGGCTCTTCCCAGAGTACATATGGCTCCTGTCAGAGTAACTAAGCACAAGAAGAAACATGTTGGTGGAGGAATAGCATTTATGATTGGTGGAGGAACACTGATGGCCACAGGGGTGGCTCTCTTTTTTGCAATCCGTTTTAATAAACTTCGTGTGCAGAGCCCGAACTTGAAGAGCTCAGAAAGCAACCATAGCTCATTGCATTCTTATCCGACCAGTGCAACCATAGGGGTATCTTCTACCGCACTCGAGGAAAGTCCACACATTCCTTCATTTAATTCTGCACCCCTTCTGGGTCCTGTGAGATTGCCTTCCACGAACCATAATGATACAGAGGAACCATCCAGTAAAAGTTTTTCTAGAAGAGGCAGATCCACTGGAAGAATGAAAATTTACACAGTGGCGGAGCTTGAGTTAGCCACTAATTGCTTCAGTGAAGCCAACATTCTGGGAGAGGGATCTCTTGGCCCTGTTTATAGAGCTAAATTTCCGGATGACAGAGTACAATCTGAATCTATTTTGGCCGTGAAGAAGATTAACATCGCGGGCATGTCTTTCAGAGAAGAGGAAAAGCTCATGGATGTCATTTGCAGGGTTTCCCGACTGAAGCACCCCAACATCGTAGCACTCAATGGTTACTGTATGGAGAAAGGAAAGGGTCTATTTGTGTACGATTATGTTGGAAATGTCACTCTACATGACGCTCTTCATAGTGAGGCATGCAAACCTCTGTCATGGGTTCACCGTCTCCAGATTGCTCTAGGTGTTGCTAAGGCTCTGGAGCATAGATTCACTGATCGCTTTGGTGACTATTGGAAACAGGCTAATGAGATTAATATGGAAGAGATGGGCTACGTTGCACCAGATCATGGCCAACCAGGAACCAGCAGCAGAAAGGGAGACGTATTTGCCTTTGGGGTATTGCTTCTCGAACTGTTAACAGGAAAGAAACCTTTCGATAGAGTCAGGCCAAAGGAGGAGCAATATCTGGTGAAATGGGCTCCGGCCATGCTTCCTGATAGAGAGAGTTTGGAACAGCTGGTGGATCCCCGCATGAAAAGAACATTTTCATCCAAGGCTCTTTCTCGTTATGCTGATATCATCTCCCCCTGTATACAGCCTGTAAGGAAACTCCGTCCTGCAATGAGCGAAGTTATGCAGTCTCTTGAATCTTTATACCAAAAGTTCGACATTGATAAGAGCGATGTAGCAGATGGTACTGAAGTTGATCCATTTGAGAGGTCTTTCCACTCAACCAACATATGCTTTTTGGGTTCTCCCGCCGCAGTGAGCCATGCATCAACCTGA 2202 0.4423 MFRHFFYVHLNLFVLSFLVSQGLAFTHPHEVSALQDLYRTFNYPPVLKGWNGSDPCGESWTGVACSGPSVIQLKLQGLNLSGYIGSLLYNIPNLKQLDVSSNNIEGEIPFGLPPNVTYMNLSHNLLHGPIGDVFTGLDNLKEMYVLYSWSYLPLDMYKMNKQFNNNQISGDLPYSFGSLRNLARLFLQNNRFTGSVAYLAELPLTDLNIQGNLFSGLLPQHFQSILNLWIGENKFHVADNSPPWTFPLDTVSVEQNTSSPPTTQANAIKNYSPPRVSEAPPGVNEAHPRVNEAPPRVSEALPRVHMAPVRVTKHKKKHVGGGIAFMIGGGTLMATGVALFFAIRFNKLRVQSPNLKSSESNHSSLHSYPTSATIGVSSTALEESPHIPSFNSAPLLGPVRLPSTNHNDTEEPSSKSFSRRGRSTGRMKIYTVAELELATNCFSEANILGEGSLGPVYRAKFPDDRVQSESILAVKKINIAGMSFREEEKLMDVICRVSRLKHPNIVALNGYCMEKGKGLFVYDYVGNVTLHDALHSEACKPLSWVHRLQIALGVAKALEHRFTDRFGDYWKQANEINMEEMGYVAPDHGQPGTSSRKGDVFAFGVLLLELLTGKKPFDRVRPKEEQYLVKWAPAMLPDRESLEQLVDPRMKRTFSSKALSRYADIISPCIQPVRKLRPAMSEVMQSLESLYQKFDIDKSDVADGTEVDPFERSFHSTNICFLGSPAAVSHAST 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03320 733 MobiDBLite consensus disorder prediction 385 422 - -
Spst1g03320 733 Gene3D Transferase(Phosphotransferase) domain 1 422 561 - -
Spst1g03320 733 MobiDBLite consensus disorder prediction 253 289 - -
Spst1g03320 733 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 16 690 IPR046959 -
Spst1g03320 733 Pfam Protein tyrosine and serine/threonine kinase 580 687 IPR001245 GO:0004672|GO:0006468
Spst1g03320 733 Pfam Protein tyrosine and serine/threonine kinase 446 560 IPR001245 GO:0004672|GO:0006468
Spst1g03320 733 ProSiteProfiles Protein kinase domain profile. 442 691 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g03320 733 SUPERFAMILY L domain-like 26 229 - -
Spst1g03320 733 Gene3D Ribonuclease Inhibitor 26 270 IPR032675 -
Spst1g03320 733 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 27 246 - -
Spst1g03320 733 MobiDBLite consensus disorder prediction 253 271 - -
Spst1g03320 733 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 406 524 - -
Spst1g03320 733 Pfam Leucine rich repeat N-terminal domain 28 66 IPR013210 -
Spst1g03320 733 SUPERFAMILY Protein kinase-like (PK-like) 421 693 IPR011009 -
Spst1g03320 733 Gene3D Transferase(Phosphotransferase) domain 1 564 708 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03320 Spst-Chr1 41780289 41785646 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03320 26 726 Strubbelig Receptor Gene Family AT5G06820 42.614 8.32e-177 522
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Spst1g03320 PK_Tyr_Ser-Thr 5.5e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03320 - - gmx:100775254 1039.64