Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03319 ATGGTTAAAACTTGGAACGTTGGAATTGGATGTGGAGGCAACAAGGGTGTGTTTGGTTCTCTGACTACACTCACTCACTCCTTCTCTCTTCTCAGTGTACCACACGCTGCCACTGCCCACTGCCACTATGGCCCAGCTCTGCCACCGCACCTCACCTCACCACCAATGGGTTCAGACGCTGCTGCCACCAAACTCTCCTCTTCTGAGTCCCTCAACGGTTTGAAATTCGGCCAAAAAATCTATTTTGAGGATGTGGGTCTGGCTACTCCAGCCACTTTTACTTCTGCTGCTGCTGGTGTTACTTCTTCTTCCTCCTCTTCTTCAAGGAAAGGAAGAGGTGGGTCTGTTCAACCAACTCAGCCTCCTAGGTGTCAAGTTGAAGGGTGTATGGTAGATCTGAGTGATGCCAAAGCTTACTATTCTAGGCACAAGGTCTGTGGCATGCATTCTAAATCCCCTACAGTCATTGTTGCTGGCCTTCAGCAAAGGTTTTGTCAACAGTGCAGCAGGTCAATAGTTCTTTCATTGTTTTTTGGTGTGATTCTTTATGTCTGTTCTGGTGGAGATGTTTGGTTCAGTAATGATTTGGCTGATTGTGCTCGCGAATTGATTCTTGCACCCCAGTTTGACTTGTTAACACTTCAATTTCTGGCTGAGAAGCAATCTATTTTCCTCAATGAGAACAATCAGAAAATGGGAAAAGAATACTCTTCTGAATATGCTAAGATAAAATCCATGTTACTAGCAATGTATGTTAAAGCTGAATTCTATGTATCATGGTCCCACACCATGAGCAACGTTTTGAGGATTGTTTCTGCAAACACAAGATTTCACCAGCTTCCGGAGTTCGATCAAGGAAAAAGAAGTTGCCGCAGGCGACTAGCTGGCCATAATGAACGTCGGAGAAAGCCCCCACCCAGCTCCCTCTTAACCTCTCGCTATGCCAGGCTTTCTTCATCTGTTTTTGATAATAGTGGCAGGGGTGGCAACTTTCTGATGGAATTGACCTCGCATCCAAAGCTTAGTCTGAGAAATTCACTTCCAACTCCTAGATCATCCGAATTAGCTCCTGGAAATCAAACCTCCACACTTAGCTGGCACGGCAACTCAGAGACACCATCTGACATTTTCTTACAAGGTTCACTGAGTGGGACAAACTTTGCCGCCCCCGGTCATCCTCCAGGGGAAAGTTACACTGGTGTCACTGACTCGAGCTGTGCTCTCTCTCTTCTGTCAAGTCAAACATGGGGTTCTAGAAACACAGCACCAAGTCTTGGGTTGAATAGCATGATAAATTTCAATGGGACACCCATGGCACAACTTACTGCATCATCTCATGGTACATCAATCCATGAACTTCCAAATGCCTCGTGGTGTTTCAAGGGCATTGATTCCGGTAACTGTTCGCCCGAGGTTGTCCCTGATCTAGGTCTGGGTCATATTTCACAGCCTCTCAATAGCCAACTTCCTGGTGAGCTGGATCTGTCTCAACAGGGCAGGAGGCATTACATGGATCTAGAACAGTCTAGGACATATGAATCTGCTGATTGGTCACTTTAA 1560 0.4615 MVKTWNVGIGCGGNKGVFGSLTTLTHSFSLLSVPHAATAHCHYGPALPPHLTSPPMGSDAAATKLSSSESLNGLKFGQKIYFEDVGLATPATFTSAAAGVTSSSSSSSRKGRGGSVQPTQPPRCQVEGCMVDLSDAKAYYSRHKVCGMHSKSPTVIVAGLQQRFCQQCSRSIVLSLFFGVILYVCSGGDVWFSNDLADCARELILAPQFDLLTLQFLAEKQSIFLNENNQKMGKEYSSEYAKIKSMLLAMYVKAEFYVSWSHTMSNVLRIVSANTRFHQLPEFDQGKRSCRRRLAGHNERRRKPPPSSLLTSRYARLSSSVFDNSGRGGNFLMELTSHPKLSLRNSLPTPRSSELAPGNQTSTLSWHGNSETPSDIFLQGSLSGTNFAAPGHPPGESYTGVTDSSCALSLLSSQTWGSRNTAPSLGLNSMINFNGTPMAQLTASSHGTSIHELPNASWCFKGIDSGNCSPEVVPDLGLGHISQPLNSQLPGELDLSQQGRRHYMDLEQSRTYESADWSL 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03319 519 SUPERFAMILY SBT domain 122 175 IPR036893 GO:0003677|GO:0005634
Spst1g03319 519 ProSiteProfiles Zinc finger SBP-type profile. 226 304 IPR004333 GO:0003677
Spst1g03319 519 ProSiteProfiles Zinc finger SBP-type profile. 121 198 IPR004333 GO:0003677
Spst1g03319 519 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 38 449 IPR044817 GO:0003677
Spst1g03319 519 MobiDBLite consensus disorder prediction 342 366 - -
Spst1g03319 519 SUPERFAMILY SBT domain 275 309 IPR036893 GO:0003677|GO:0005634
Spst1g03319 519 MobiDBLite consensus disorder prediction 100 121 - -
Spst1g03319 519 Pfam SBP domain 124 177 IPR004333 GO:0003677
Spst1g03319 519 Pfam SBP domain 273 303 IPR004333 GO:0003677
Spst1g03319 519 Gene3D - 114 291 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03319 Spst-Chr1 41767841 41771803 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03319 269 519 SBP-box Gene Family AT2G42200 37.201 1.88e-32 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Spst1g03319 SBP 1.1e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03319 - - gmx:100807165 450.669
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03319 1 41767841 41771803 Spst1g03319 1 41767841 41771803 ECH
Spst1g03319 1 41767841 41771803 Spst7g00263 7 2025282 2029476 PCT