Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03317 ATGTTCTCCTTTCGAAAACTCTACTCTCATTGCTTCTTCTCCTTCGTTCTTAAACCCTGGCCAAACCCTAAATTCCAGAGCACGAAATCCGCCTCCAAGTTCGTCGCAAAAACCACCGTAAAAGAAGCCCAAGCCGCCTTGCTCGAGTACCTCCACTCCACGCGCAGCCTCAACTTCTTAGACGCCGACAACATGTGCACAAACTCGCCCTCCTTCCTCCACGACCTCCTCGCCAAAACCCACTCTCACACGCGGCGCGTCGACACCAAGCGCTCCATCTCCCGCTACCTCCGCTACCACCCCATCAACGAGTTCGAGCCCTTCTTCGAAAGTGCGGGTCTTTCCCCTCCCGAGTACGCCCCCCTCCTCCCGCCTCACATGATTTACCTAAACGACGACGTTCTGCTCATGGAGAATCACCAGGCGCTCTGCAACTATGGCGTTCCCCGCACTAAGATGGGGAGGGTTTTCAAACTCGTGCCTCAGGTTTTTCGGTATGAACCCGGCGTTTTGATCTCTAGGCTTCGGGAATACGAAAACCTTGGTGTTTCACCAAAGACTTTGGTCAATGTGGTTGCTTCCAGTCCCTGCGTTTTGGTTCGGGGTGTTGACCTTGATTTTGTTAAGGTTGTGGAGAAGTTGAAGAGTGTTATGGGAAAGGATTGTGATTGGATTGGAGAGCGTTTGTTGATTAACAAGGGTTGTTGTAATTGGAGAGTAATGCGTCAGGTTTTGAGTTTGGTTTCTAGAGTTTACAATGAGAAACAGTTGGTTGATTTAGTCACCCGTCACCCTGATTTGATTTTTGAGGAGTCTGGACGATGTGTGTTGTCTTTGATTGATTTTTTGTTGAAATTTGGCTTGTCTGTAAACCAGGTTTCTGTCATGCTGCTCGAATTTCCGGAGATTCGGGTTGCAAAATTTTTGTCCAATTTGAGGCTGTGTTTTCTGTTCTTGACTGAGATTGAGATGGAGGCTTCGGAGATTGGGAGGATTTTGCAGTCTCATTGCTTGGTGCTGGGTTCCTTCACCATGAAGAGAACGATTACTTTGCTTACTAGCTTGAATGTGGGAAAGAAACGGCTGTGTAGAATTGTGAGGGATGATCCTCTAATAATGAAGAGTTGGGCTTTGGGAAGGAGGATTGAGCCTCTGGTGAGCTCGTATTTGGAGTATGAATCGAAGGCCCTGAAGAAGGAGTTCATGCTGAGGTTGGGGTATGAGGAGAACTCTAAAAAAATGAATCAGTCGATTAGGTTGTTCAGGGGTAAGGGAGCTGAGCTTCAGGAAAGACTTGAATTTATTGTTAATGCTGGTTTGGATTATGATGTTGTCTGTAGGATGATTCGAGATTCCCCGCGGATTCTTAATCAGACAACGGAGAGGATGAACTTGAAAATCAAGTATCTTGTGAATGAAGGATATTCGATATCAGATTTGGTGGCTTTTCCTTCCTTTCTTTCCTATTCGCCTCGAAGGTTTAAGCTGAGGTGTTCAATGTATAATTGGCTCAAAGAACATGGAGCTGTAGAAGCAGCGGGGCTTGCTTTGAGCACTATAATTGCATGCTCTGAGAAAGCGTTTGAGAAGCTGTATGTGAAGCGCCATCCGGCTGGCCTTCAAGTTTGGCAGGATTTGAAGGCACAAATTTCTTCTAAGGCTTAG 1665 0.4673 MFSFRKLYSHCFFSFVLKPWPNPKFQSTKSASKFVAKTTVKEAQAALLEYLHSTRSLNFLDADNMCTNSPSFLHDLLAKTHSHTRRVDTKRSISRYLRYHPINEFEPFFESAGLSPPEYAPLLPPHMIYLNDDVLLMENHQALCNYGVPRTKMGRVFKLVPQVFRYEPGVLISRLREYENLGVSPKTLVNVVASSPCVLVRGVDLDFVKVVEKLKSVMGKDCDWIGERLLINKGCCNWRVMRQVLSLVSRVYNEKQLVDLVTRHPDLIFEESGRCVLSLIDFLLKFGLSVNQVSVMLLEFPEIRVAKFLSNLRLCFLFLTEIEMEASEIGRILQSHCLVLGSFTMKRTITLLTSLNVGKKRLCRIVRDDPLIMKSWALGRRIEPLVSSYLEYESKALKKEFMLRLGYEENSKKMNQSIRLFRGKGAELQERLEFIVNAGLDYDVVCRMIRDSPRILNQTTERMNLKIKYLVNEGYSISDLVAFPSFLSYSPRRFKLRCSMYNWLKEHGAVEAAGLALSTIIACSEKAFEKLYVKRHPAGLQVWQDLKAQISSKA 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03317 554 PANTHER CGI-12 PROTEIN-RELATED 254 536 IPR003690 GO:0003690|GO:0006355
Spst1g03317 554 SMART mt_12 189 221 IPR003690 GO:0003690|GO:0006355
Spst1g03317 554 SMART mt_12 330 358 IPR003690 GO:0003690|GO:0006355
Spst1g03317 554 SMART mt_12 258 289 IPR003690 GO:0003690|GO:0006355
Spst1g03317 554 SMART mt_12 446 476 IPR003690 GO:0003690|GO:0006355
Spst1g03317 554 SMART mt_12 477 510 IPR003690 GO:0003690|GO:0006355
Spst1g03317 554 SMART mt_12 294 325 IPR003690 GO:0003690|GO:0006355
Spst1g03317 554 SMART mt_12 154 184 IPR003690 GO:0003690|GO:0006355
Spst1g03317 554 FunFam Transcription termination factor MTEF18, mitochondrial 279 546 - -
Spst1g03317 554 Pfam mTERF 412 529 IPR003690 GO:0003690|GO:0006355
Spst1g03317 554 Pfam mTERF 254 382 IPR003690 GO:0003690|GO:0006355
Spst1g03317 554 Gene3D Transcription termination factor 3, mitochondrial 67 237 IPR038538 -
Spst1g03317 554 Gene3D Transcription termination factor 3, mitochondrial 277 546 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03317 Spst-Chr1 41749891 41751555 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Spst1g03317 mTERF 2.2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03317 - - gmx:100807690 839.336
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03317 1 41749891 41751555 Spst1g03317 1 41749891 41751555 ECH