Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03314 ATGAACGAGAACAACGTTCATTGGGGAGGATTGATTCAACAAAGTCATGGACTAAGTGGGGATTTTAATTCTGAGTTTGGCAATCATTACTGTCAGTATTTTGATATCAGACAGGCTTGGAATATGGGACCACTTGCCATGGTTGGAGGAGAAGCTATAGATCAGTTACCAAACATAGGCCATGTCAAATCATCTGGCACCATTATCAGCCGTTTTGAGTCACCAGCTTCTGCCTTTTATGCTGCAGAAAACTGCATGGGGTTTGCAGAATATGATTGCCAAGTTGGTATTCAATCTCAGTTATGTAAGATTAATGACTTGGAATTCCCTTTGTATCAATCTCCCAGGGAAAACCTTTTCTTGGATTCGGTAAACCAACCTGACTCCAACTTTGACTTGTCAAACACTTTGCAATCCATAGTGAAATCTCAATTGAATAATAATCAATGTCGTGGAACCCCTGAGAAGTCCAATAAAATTTCATGTGGGAATTTTCCCACCACCAACTTCCTTCCAATTGAACAACAGAAGTTGTTCATTGATGGTGTTATCAGGGGCTCATCATTTCCTAACAAAGGAAGTCAGGACCATATGGTTGCTCGTGGATCCATTAATTTACCTGTTGCACAGCTGAGATTTTCTTCTCAGATTGAGAAGTTGTCTCCAACACTTTCAGCAGGAAGTGTGTCTACTATTGGAAACTCTGCTTCTAATGGGGCAGTAGTCTCAAGTAAAACACGTATACGATGGACTAAGGATCTTCATGAGAAGTTTGTTGAGTGTGTGAATCGCCTTGGAGGCTCTGAGCAGGCAACACCAAAAGCTATATTAAAGATGATGGGCACAGATGGTTTGACTATCTTCCATATCAAAAGTCATTTGCAGAAATATAGAATTGCAAAATTCATTCCAGATCCCTGTCAAGGGAAATCTGACAAAAGAACCCACCACACAAAGAATATGCATCATCTTGATGTCAAAACAGGATTACAAATTAGAGAGGCACTTAAGCTTCAATTAGATGCTCAAAGGTGTCTTCACGAACAACTAGAGATTCAGAGAAAATTACAGTTGAGAATTGAGGAACAAGGAAGGCAACTAAAAAAAATGTTTGACCAGCAGCAGAAGAAAAGTAATAACCTGTCAAATACACAGGATTCAGCCACTGATGAGACAACAATTAGTCATAAAGATGGTGAGGTTTCTGTTCCTGGAGGGGTTCAAAAATCCTTCTTCACTTCCAAGCCCTCTCCAAGCAAATAA 1263 0.399 MNENNVHWGGLIQQSHGLSGDFNSEFGNHYCQYFDIRQAWNMGPLAMVGGEAIDQLPNIGHVKSSGTIISRFESPASAFYAAENCMGFAEYDCQVGIQSQLCKINDLEFPLYQSPRENLFLDSVNQPDSNFDLSNTLQSIVKSQLNNNQCRGTPEKSNKISCGNFPTTNFLPIEQQKLFIDGVIRGSSFPNKGSQDHMVARGSINLPVAQLRFSSQIEKLSPTLSAGSVSTIGNSASNGAVVSSKTRIRWTKDLHEKFVECVNRLGGSEQATPKAILKMMGTDGLTIFHIKSHLQKYRIAKFIPDPCQGKSDKRTHHTKNMHHLDVKTGLQIREALKLQLDAQRCLHEQLEIQRKLQLRIEEQGRQLKKMFDQQQKKSNNLSNTQDSATDETTISHKDGEVSVPGGVQKSFFTSKPSPSK 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03314 420 Pfam MYB-CC type transfactor, LHEQLE motif 330 376 IPR025756 -
Spst1g03314 420 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 238 393 IPR044848 GO:0003700
Spst1g03314 420 MobiDBLite consensus disorder prediction 371 420 - -
Spst1g03314 420 MobiDBLite consensus disorder prediction 373 390 - -
Spst1g03314 420 NCBIfam myb-like DNA-binding domain, SHAQKYF class 245 300 IPR006447 GO:0003677
Spst1g03314 420 Coils Coil 333 353 - -
Spst1g03314 420 FunFam Myb family transcription factor 244 302 - -
Spst1g03314 420 Pfam Myb-like DNA-binding domain 249 298 IPR001005 -
Spst1g03314 420 SUPERFAMILY Homeodomain-like 243 299 IPR009057 -
Spst1g03314 420 Gene3D - 244 303 - -
Spst1g03314 420 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 244 302 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03314 Spst-Chr1 41727742 41730401 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03314 229 388 G2-like Transcription Factor Family AT4G28610 51.852 6.17e-49 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Spst1g03314 Myb_DNA-binding 1.3e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03314 - - gmx:100527766 679.863