Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Spst1g03308 | ATGGATACCCGCAAGAGGGGAAGGCTCGAACTCGGTTTCAACTCAAATGGTGGATTTAAGAAATCCAAACAAGAAACGGAGTCCTTATCTACTGGTGTAGGAAGCAAATCGAAGCCTTGTACCAAGTTTTTCAGCACTTCTGGTTGTCCATTTGGTGAGGGCTGCCACTTCCTGCATTACGTTCCTGGTGGCTATAATGCTGTTGCCCATATGATGAATCTAACACCTGCAGCACCTCCAGCATCAAGAAATGTTGCAGCTCTGCCACCTGTACCAAATGGGTCCACACCACCTGCTGTCAAGACCCGCATATGCAACAAGTTTAATACGGCTGAAGGTTGCAAATTTGGTGACAAATGCCATTTTGCCCATGGCGAATGGGAACTTGGTAAGCATATTGCTCCATCATTTGATGATCATCGAACCGTTGGACCCACTGCAGCAGGTCGTTTTGCTGGTCGAGCGGAGCCTTCTCCTGGTCCTGCCACAAGTTTTGGTTCCCATGCCACTGCCAAGATCAGCGTAGAAGCTTCCCTGGCTGGAGCAATCATTGGGAAGGGTGGTGTGAACTCAAAACAGATTTGCCGCCAAACTGGAGCCAAACTTTCGATCCGGGAGCATGAATCTGATCCTAATATTAGAAACATTGAACTAGAGGGGAATTTTGAGCAAATTAAGGAAGCAAGTAACATGGTGAAGGATTTGCTTCTGACCCTGCAAATGTCTGCCACATCAAAAGCTAACCCAGGTGTTCCTGGTGCACCTATTCGAGAGCATGGAAGCAATTTTAAGACAAAGTTATGTGAGAATTTTTCCAAAGGATCTTGCACATTTGGAGAGAGATGTCACTTTGCTCATGGAGCTGCTGAATTGCGTAAATCAGGATGA | 888 | 0.4651 | MDTRKRGRLELGFNSNGGFKKSKQETESLSTGVGSKSKPCTKFFSTSGCPFGEGCHFLHYVPGGYNAVAHMMNLTPAAPPASRNVAALPPVPNGSTPPAVKTRICNKFNTAEGCKFGDKCHFAHGEWELGKHIAPSFDDHRTVGPTAAGRFAGRAEPSPGPATSFGSHATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIREHESDPNIRNIELEGNFEQIKEASNMVKDLLLTLQMSATSKANPGVPGAPIREHGSNFKTKLCENFSKGSCTFGERCHFAHGAAELRKSG | 295 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Spst1g03308 | 295 | Pfam | RNA-binding, Nab2-type zinc finger | 39 | 59 | - | - | |
| Spst1g03308 | 295 | MobiDBLite | consensus disorder prediction | 17 | 36 | - | - | |
| Spst1g03308 | 295 | SUPERFAMILY | CCCH zinc finger | 261 | 292 | IPR036855 | GO:0046872 | |
| Spst1g03308 | 295 | SUPERFAMILY | Eukaryotic type KH-domain (KH-domain type I) | 158 | 240 | IPR036612 | GO:0003723 | |
| Spst1g03308 | 295 | PANTHER | CCCH ZINC FINGER/TIS11-RELATED | 23 | 152 | IPR045877 | GO:0003729 | |
| Spst1g03308 | 295 | SMART | kh_6 | 167 | 237 | IPR004087 | GO:0003676 | |
| Spst1g03308 | 295 | ProSiteProfiles | Zinc finger C3H1-type profile. | 262 | 289 | IPR000571 | GO:0046872 | |
| Spst1g03308 | 295 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 101 | 126 | IPR000571 | GO:0046872 | |
| Spst1g03308 | 295 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 263 | 287 | IPR000571 | GO:0046872 | |
| Spst1g03308 | 295 | FunFam | Zinc finger CCCH domain-containing protein | 258 | 293 | - | - | |
| Spst1g03308 | 295 | SUPERFAMILY | CCCH zinc finger | 35 | 60 | IPR036855 | GO:0046872 | |
| Spst1g03308 | 295 | ProSiteProfiles | Zinc finger C3H1-type profile. | 34 | 62 | IPR000571 | GO:0046872 | |
| Spst1g03308 | 295 | Gene3D | K Homology domain, type 1 | 164 | 260 | IPR036612 | GO:0003723 | |
| Spst1g03308 | 295 | ProSiteProfiles | Type-1 KH domain profile. | 168 | 232 | - | - | |
| Spst1g03308 | 295 | MobiDBLite | consensus disorder prediction | 1 | 36 | - | - | |
| Spst1g03308 | 295 | Gene3D | - | 261 | 294 | - | - | |
| Spst1g03308 | 295 | Gene3D | - | 93 | 131 | - | - | |
| Spst1g03308 | 295 | CDD | KH-I_AtC3H36_like | 171 | 236 | - | - | |
| Spst1g03308 | 295 | SMART | c3hfinal6 | 34 | 61 | IPR000571 | GO:0046872 | |
| Spst1g03308 | 295 | SMART | c3hfinal6 | 262 | 288 | IPR000571 | GO:0046872 | |
| Spst1g03308 | 295 | SMART | c3hfinal6 | 99 | 126 | IPR000571 | GO:0046872 | |
| Spst1g03308 | 295 | ProSiteProfiles | Zinc finger C3H1-type profile. | 99 | 127 | IPR000571 | GO:0046872 | |
| Spst1g03308 | 295 | SUPERFAMILY | CCCH zinc finger | 97 | 130 | IPR036855 | GO:0046872 | |
| Spst1g03308 | 295 | FunFam | Zinc finger CCCH domain-containing protein | 94 | 131 | - | - | |
| Spst1g03308 | 295 | Pfam | KH domain | 171 | 233 | IPR004088 | GO:0003723 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Spst1g03308 | Spst-Chr1 | 41691925 | 41694579 | Dispersed/Wgd |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C3H | Spst1g03308 | KH_1 | 1.2e-11 | CL0007 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Spst1g03308 | - | - | gmx:100803981 | 558.91 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Spst1g03308 | 1 | 41691925 | 41694579 | Spst7g00254 | 7 | 1947553 | 1951537 | PCT |