Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03303 ATGCCTTCGTGGTATGAGAATATGTTTTATTGGTGCATGAATGCGAGATCCCCTCCCGAGACGAGTGATGATGAGGAGGAGGAATTAGGAGTTGGAAATGCTCTTGCTTGGAGTAAAGACCTTGAGAAGCATTATTGTGGTGAACTGTCCTATGCTGTGTGTCAGGCCAACCAATTTATTGAGGATTATAGTCATGTTGAGATTGGCAAAAATGTCATTCTTGTTGGGATTTATGATGGCCATGGTGGTCCTCAAACTGCCAACTTTATCAGAGATCACTTAATTGACAATCTATTAGCAATTTATGGAAGTTTTATGTGGAACTTGGTTACAGTTAGTATTGAGGATAAAAGAACTATCGATGAAGCAACTATGAGGGAAACTATTTCTGCTGTAGAGGATGAGTTTCTGAGTTATGTTAGAGTGAATTATAATGTATCGCCGCAGATTCTAAAAGTTGGTTCCTGTTGTCTGGTTGGTGTTATCTGGAATGGGGTTCTACAAATCGCCAATCTTGGAGACTCCCGTGCCATAGTTGGTTCTGTTAGTAGATGTAACAAGCTCTCTGTTGAACAGTTGACTGTAGATCACAATGTTAATAGGGACGAGATTAGACAAGAAGTTAGGGATTTGCATCCAAACGATCCTGATATTGTATCTGTAAGTCGTGGAGCATGGCGTATTGAAGGCGTCATCCAGGTATCCAGAAGCATAGGAGATGTATATTTGAAGAATCCAGTGGTCCCTGAAGATCCATTATTCCCTAAGCCCCGCTTTGGTAAAGCTGTGGTGAGTGCAGAGCCAGCTCTACTGTCAAGAGTTTTGCATCGCCATGACAAATTTCTTATATTTGCATCGGATGGACTTTGGCAGTACTTGTCAAATGAGCAAGCAGCTGAAATTGTTCATTTAAGTCCACGAGATGGGGTTGCAAAAAAACTTGTTAGGGCTGCTTTAAAGGCGGCAGCTAAAGCAATGAAAGTTACATATCAAGCTCTTCTGAACGCTGATTTAGCGGGCAGACGGGTTTATCATGACGACATTACTGTGATTGTTGTCTTCTTAGACCATCGGTTTGTTCACAGGAGAGATACTGATATGACAGAGTTGTCCATAAAAGGTATACTTTCTGTTTCTGAATCTCATTTGCTGGTCATAACTAATGCTGATATTGGATTAGAAGGCCATGTTAAAGTCAAAGTTATAAATCTAAGAATGGTTGGGATAAGGGCCAAGATAGGAAGAAGTAACGAGGCTCCGTTTGAGAGGGAGATAATGGCCATGGAGAGACAGACTCAACAATTCAATGGGCAGGCCAAGACATAG 1326 0.414 MPSWYENMFYWCMNARSPPETSDDEEEELGVGNALAWSKDLEKHYCGELSYAVCQANQFIEDYSHVEIGKNVILVGIYDGHGGPQTANFIRDHLIDNLLAIYGSFMWNLVTVSIEDKRTIDEATMRETISAVEDEFLSYVRVNYNVSPQILKVGSCCLVGVIWNGVLQIANLGDSRAIVGSVSRCNKLSVEQLTVDHNVNRDEIRQEVRDLHPNDPDIVSVSRGAWRIEGVIQVSRSIGDVYLKNPVVPEDPLFPKPRFGKAVVSAEPALLSRVLHRHDKFLIFASDGLWQYLSNEQAAEIVHLSPRDGVAKKLVRAALKAAAKAMKVTYQALLNADLAGRRVYHDDITVIVVFLDHRFVHRRDTDMTELSIKGILSVSESHLLVITNADIGLEGHVKVKVINLRMVGIRAKIGRSNEAPFEREIMAMERQTQQFNGQAKT 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03303 441 SMART PP2C_4 42 353 IPR001932 -
Spst1g03303 441 Pfam Protein phosphatase 2C 71 323 IPR001932 -
Spst1g03303 441 ProSitePatterns PPM-type phosphatase domain signature. 74 82 IPR000222 GO:0043169
Spst1g03303 441 Gene3D - 34 366 IPR036457 -
Spst1g03303 441 PANTHER PROTEIN PHOSPHATASE 33 356 IPR015655 GO:0004722|GO:0006470
Spst1g03303 441 ProSiteProfiles PPM-type phosphatase domain profile. 45 355 IPR001932 -
Spst1g03303 441 CDD PP2Cc 50 355 IPR001932 -
Spst1g03303 441 SUPERFAMILY PP2C-like 54 356 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03303 Spst-Chr1 41580098 41583812 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03303 35 375 PP2C-type Phosphatase Gene Family AT5G06750 47.851 1.35e-113 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03303 K01102 - gmx:100806476 364.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03303 1 41580098 41583812 Spst1g03303 1 41580098 41583812 ECH
Spst1g03303 1 41580098 41583812 Spst3g01682 3 20647348 20659319 ECH
Spst1g03303 1 41580098 41583812 Spst7g00247 7 1909518 1917294 PCT